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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:779.6 nTPM
FANTOM5:1186.3 Scaled Tags Per Million
Pig:516.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004426Antibody CAB004647
Glial cells HighHigh
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

779.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 779.6
Samples: 300

Max nTPM: 1328.3
Min nTPM: 325.1
Std nTPM: 158.4
Median nTPM: 771.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1328.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1206.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1188.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1174.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1153.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1138.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1110.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1100.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1089.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1084.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1083.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1081.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1076.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1055.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1051.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1042.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1040.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1035.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1034.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1026.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1022.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1019.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1017.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1014.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1011.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1009.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1008.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1004.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1001.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 998.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 994.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 992.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 991.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 988.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 978.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 977.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 973.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 971.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 964.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 962.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 959.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 957.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 950.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 949.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 944.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 940.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 940.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 936.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 933.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 930.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 927.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 927.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 927.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 926.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 924.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 923.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 922.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 922.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 916.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 910.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 908.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 907.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 907.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 906.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 905.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 905.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 898.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 897.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 896.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 889.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 887.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 883.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 881.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 880.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 878.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 878.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 873.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 873.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 872.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 872.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 870.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 869.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 869.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 868.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 867.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 863.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 861.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 859.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 855.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 854.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 853.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 852.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 851.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 848.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 847.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 843.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 842.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 839.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 836.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 835.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 834.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 830.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 829.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 828.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 828.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 826.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 826.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 825.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 824.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 823.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 822.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 821.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 819.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 816.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 816.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 816.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 814.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 814.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 808.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 808.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 808.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 806.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 806.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 806.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 805.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 805.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 804.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 802.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 802.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 801.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 800.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 799.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 799.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 794.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 793.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 793.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 793.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 791.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 787.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 785.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 784.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 784.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 784.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 778.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 778.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 778.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 776.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 773.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 773.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 772.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 770.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 766.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 766.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 765.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 762.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 761.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 761.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 759.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 759.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 759.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 756.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 749.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 748.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 747.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 746.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 744.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 742.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 741.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 739.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 738.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 735.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 734.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 734.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 734.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 732.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 731.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 729.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 729.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 729.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 728.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 728.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 728.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 726.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 725.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 723.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 722.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 721.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 719.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 719.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 716.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 715.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 714.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 713.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 712.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 711.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 710.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 710.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 710.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 709.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 706.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 705.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 703.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 703.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 703.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 702.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 700.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 700.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 698.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 697.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 695.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 693.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 691.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 691.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 689.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 688.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 688.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 688.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 688.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 686.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 682.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 682.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 682.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 681.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 680.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 679.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 678.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 675.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 674.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 671.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 668.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 668.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 667.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 661.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 661.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 659.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 657.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 656.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 654.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 652.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 650.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 650.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 649.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 647.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 644.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 642.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 638.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 638.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 636.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 635.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 633.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 632.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 631.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 630.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 628.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 628.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 627.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 627.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 619.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 614.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 614.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 612.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 610.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 603.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 603.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 599.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 594.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 591.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 590.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 584.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 580.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 579.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 578.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 577.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 576.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 574.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 570.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 564.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 563.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 563.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 562.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 552.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 545.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 543.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 536.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 524.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 521.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 520.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 518.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 518.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 514.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 512.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 489.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 471.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 461.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 448.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 445.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 443.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 429.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 417.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 325.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1186.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1186.3
FF:10164-103B2 76 years, female 1186.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

516.9
Pig sample Sample description nTPM
Caudate
nTPM: 517.0
Samples: 4

Max nTPM: 629.3
Min nTPM: 451.8
Sample A Female 451.8
Sample B Female 521.8
Sample C Male 629.3
Sample D Male 464.9

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