MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:185.3 nTPM
HPA Brain:350.0 nTPM
GTEx:185.3 nTPM
FANTOM5:276.2 Scaled Tags Per Million
Pig:66.9 nTPM
Mouse:54.9 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 350.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 254.7
1830 Male, age 51, unknown 319.9
2666 Male, age 74, left hemisphere 312.5
1833 Male, age 53, unknown 309.9
2411 Female, age 72, unknown 272.7
2586 Male, age 75, left hemisphere 265.5
2019 Male, age 18, unknown 249.9
1870 Female, age 42, unknown 236.3
2828 Female, age 72, unknown 224.5
2219 Male, age 76, both hemispheres 197.0
1827 Male, age 72, unknown 159.2
Dorsal raphe nucleus
nTPM: 157.4
2750 Male, age 76, both hemispheres 275.3
2016 Female, age 72, unknown 185.1
1828 Male, age 53, unknown 148.0
2047 Male, age 72, unknown 96.3
2298 Female, age 72, unknown 82.2
Inferior colliculus
nTPM: 149.5
2849 Male, age 72, unknown 164.6
1890 Male, age 53, unknown 160.4
1848 Female, age 42, unknown 157.6
2097 Female, age 72, unknown 115.3
Median raphe nucleus
nTPM: 114.8
2220 Male, age 76, midline 114.8
Periaquaductal grey, anterior
nTPM: 160.2
1947 Male, age 18, unknown 187.7
2502 Female, age 75, unknown 179.9
1795 Male, age 51, unknown 113.1
Periaquaductal grey, dorsal
nTPM: 110.0
2464 Female, age 72, unknown 182.8
1831 Male, age 72, unknown 117.4
1840 Male, age 53, unknown 73.9
2850 Male, age 76, both hemispheres 66.1
Periaquaductal grey, lateral
nTPM: 96.7
2053 Male, age 18, unknown 115.1
2272 Male, age 74, both hemispheres 109.2
2140 Male, age 76, both hemispheres 65.8
Pretectal area
nTPM: 147.9
1815 Male, age 53, unknown 255.9
2316 Male, age 76, right hemisphere 204.2
1817 Female, age 42, unknown 195.5
2007 Male, age 72, unknown 181.8
2407 Male, age 75, both hemispheres 161.5
2825 Male, age 18, unknown 151.0
1816 Male, age 51, unknown 114.2
2224 Female, age 72, unknown 98.4
2667 Female, age 75, unknown 93.8
1944 Female, age 72, unknown 91.7
2273 Male, age 74, both hemispheres 79.1
Red nucleus
nTPM: 350.0
1904 Male, age 53, unknown 442.2
1865 Male, age 51, unknown 420.0
2503 Female, age 72, unknown 406.2
2588 Male, age 74, left hemisphere 398.8
1821 Female, age 72, unknown 380.2
2769 Male, age 72, unknown 351.7
2227 Male, age 72, unknown 347.6
2823 Male, age 76, right hemisphere 336.9
2785 Male, age 18, unknown 328.3
1954 Female, age 42, unknown 316.2
2725 Female, age 75, unknown 265.9
2584 Male, age 75, left hemisphere 206.1
Substantia nigra
nTPM: 177.9
2409 Female, age 72, unknown 236.4
2590 Female, age 75, unknown 207.2
1889 Female, age 72, unknown 202.5
2665 Male, age 74, both hemispheres 201.1
1851 Male, age 51, unknown 193.3
2583 Male, age 75, right hemisphere 176.1
2699 Male, age 18, unknown 160.7
2241 Male, age 72, unknown 154.9
1941 Male, age 53, unknown 128.4
1916 Female, age 42, unknown 118.3
Superior colliculus
nTPM: 213.4
1995 Male, age 72, unknown 302.9
2668 Female, age 75, unknown 282.9
1895 Male, age 76, right hemisphere 262.2
1913 Female, age 42, unknown 252.4
2587 Male, age 74, left hemisphere 236.5
1839 Male, age 51, unknown 217.4
2664 Male, age 75, both hemispheres 166.6
1796 Male, age 53, unknown 151.4
2261 Male, age 18, unknown 143.7
2087 Female, age 72, unknown 117.8
Ventral tegmental area
nTPM: 178.7
2410 Female, age 72, unknown 265.8
2223 Female, age 72, unknown 229.6
1942 Male, age 51, unknown 154.9
1915 Female, age 42, unknown 150.5
2218 Male, age 76, both hemispheres 141.9
2021 Male, age 53, unknown 129.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 185.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 185.3
Samples: 183

Max nTPM: 632.1
Min nTPM: 13.9
Std nTPM: 109.2
Median nTPM: 163.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 632.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 523.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 523.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 462.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 428.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 425.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 425.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 411.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 408.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 402.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 396.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 276.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 276.2
FF:10158-103A5 76 years, female 276.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.9
Samples: 4

Max nTPM: 102.1
Min nTPM: 49.0
Sample A Female 62.4
Sample B Female 49.0
Sample C Male 54.2
Sample D Male 102.1
Midbrain
nTPM: 66.9
Samples: 4

Max nTPM: 130.9
Min nTPM: 35.7
Sample A Female 130.9
Sample B Female 62.7
Sample C Male 35.7
Sample D Male 38.1
Periaqueductal gray
nTPM: 44.1
Samples: 3

Max nTPM: 50.1
Min nTPM: 32.9
Sample B Female 50.1
Sample C Male 32.9
Sample D Male 49.4
Superior colliculi
nTPM: 54.4
Samples: 4

Max nTPM: 57.8
Min nTPM: 50.4
Sample A Female 55.6
Sample B Female 53.7
Sample C Male 50.4
Sample D Male 57.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.9
Samples: 4

Max nTPM: 57.4
Min nTPM: 53.2
Sample A Male 53.2
Sample B Male 53.2
Sample C Female 55.9
Sample D Female 57.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 1.2
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.8
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.7

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