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RPL23A
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPL23A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:859.7 nTPM
FANTOM5:13.6 Scaled Tags Per Million
Pig:1765.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051754
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

859.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 859.7
Samples: 300

Max nTPM: 2172.7
Min nTPM: 386.8
Std nTPM: 238.8
Median nTPM: 825.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2172.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1944.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1915.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1654.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1625.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1553.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1521.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1421.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1415.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1397.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1380.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1354.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1349.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1295.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1288.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1254.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1247.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1227.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1207.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1197.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1168.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1163.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1162.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1153.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1135.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1134.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1130.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1130.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1129.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1124.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1118.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1110.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1109.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1109.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1105.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1103.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1099.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1095.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1092.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1089.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1088.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1084.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1084.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1061.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1057.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1055.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1054.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1049.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1047.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1047.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1041.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1038.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1033.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1032.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1032.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1031.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1029.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1028.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1026.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1025.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1023.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1017.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1017.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1010.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1004.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 995.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 991.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 989.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 981.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 978.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 975.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 974.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 974.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 973.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 973.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 972.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 971.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 966.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 962.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 960.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 953.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 953.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 953.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 953.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 951.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 945.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 944.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 933.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 931.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 931.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 930.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 929.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 929.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 926.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 923.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 922.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 920.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 918.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 917.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 914.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 914.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 912.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 910.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 906.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 905.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 903.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 898.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 897.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 894.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 891.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 891.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 890.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 890.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 886.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 884.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 884.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 881.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 879.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 876.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 876.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 873.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 872.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 864.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 864.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 863.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 862.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 860.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 860.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 856.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 852.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 850.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 850.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 849.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 849.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 849.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 848.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 847.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 845.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 844.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 844.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 839.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 837.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 836.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 835.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 833.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 832.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 830.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 829.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 827.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 826.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 824.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 823.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 822.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 819.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 818.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 818.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 818.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 815.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 814.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 814.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 806.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 806.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 805.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 805.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 804.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 803.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 802.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 802.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 798.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 797.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 797.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 796.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 793.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 793.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 793.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 792.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 791.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 789.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 787.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 786.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 786.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 783.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 782.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 782.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 782.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 776.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 775.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 771.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 771.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 768.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 767.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 766.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 764.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 759.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 756.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 750.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 749.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 749.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 746.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 745.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 740.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 737.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 736.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 736.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 730.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 724.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 723.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 720.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 719.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 719.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 719.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 715.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 715.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 714.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 714.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 713.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 713.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 713.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 712.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 710.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 706.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 706.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 705.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 705.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 702.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 702.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 698.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 698.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 698.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 692.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 691.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 687.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 682.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 678.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 677.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 676.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 674.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 674.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 673.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 672.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 672.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 671.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 666.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 661.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 660.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 657.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 654.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 653.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 653.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 652.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 651.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 640.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 640.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 639.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 638.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 636.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 633.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 631.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 630.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 629.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 627.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 626.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 625.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 624.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 619.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 617.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 616.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 616.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 611.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 609.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 602.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 602.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 600.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 585.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 584.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 584.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 581.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 578.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 574.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 573.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 571.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 570.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 567.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 567.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 566.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 561.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 553.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 551.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 543.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 542.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 541.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 540.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 538.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 532.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 516.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 514.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 505.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 490.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 450.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 386.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.6
FF:10164-103B2 76 years, female 13.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1765.0
Pig sample Sample description nTPM
Caudate
nTPM: 1765.0
Samples: 4

Max nTPM: 2000.3
Min nTPM: 1469.5
Sample A Female 1837.9
Sample B Female 1752.2
Sample C Male 2000.3
Sample D Male 1469.5

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