HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:956.6 nTPM
HPA Brain:220.1 nTPM
GTEx:956.6 nTPM
FANTOM5:16.7 Scaled Tags Per Million
Pig:2486.5 nTPM
Mouse:1015.1 nTPM
Allen mouse:13.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051754
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 220.1
Sample id Sample description nTPM
Hippocampus
nTPM: 220.1
2529 Female, age 94, left hemisphere 265.8
1898 Male, age 80, left hemisphere 256.6
1911 Female, age 85, right hemisphere 211.1
2148 Female, age 91, left hemisphere 205.2
1855 Male, age 76, left hemisphere 201.3
2621 Female, age 67, right hemisphere 180.9
Dentate gyrus
nTPM: 211.5
2530 Female, age 94, left hemisphere 294.9
2010 Male, age 76, both hemispheres 227.7
2531 Female, age 67, both hemispheres 193.9
2528 Male, age 74, both hemispheres 191.4
2246 Female, age 85, both hemispheres 185.6
1927 Female, age 91, both hemispheres 175.4
Entorhinal gyrus
nTPM: 204.4
2686 Male, age 75, right hemisphere 264.4
2117 Female, age 91, right hemisphere 249.3
1787 Male, age 76, left hemisphere 194.2
2764 Male, age 80, right hemisphere 190.5
1938 Female, age 85, left hemisphere 175.0
2613 Female, age 94, left hemisphere 153.2
Hippocampus, CA1
nTPM: 208.7
2082 Female, age 91, right hemisphere 222.8
2749 Male, age 80, left hemisphere 220.7
1873 Female, age 85, both hemispheres 215.8
2527 Male, age 74, both hemispheres 203.1
2045 Male, age 76, both hemispheres 181.2
Hippocampus, CA2
nTPM: 214.9
1963 Male, age 80, left hemisphere 264.8
1892 Male, age 76, both hemispheres 220.3
2113 Female, age 91, right hemisphere 220.1
2437 Female, age 94, left hemisphere 201.5
2249 Male, age 74, both hemispheres 193.5
1940 Female, age 85, left hemisphere 189.2
Hippocampus, CA3
nTPM: 188.9
1891 Female, age 85, both hemispheres 236.6
1867 Male, age 76, both hemispheres 231.6
2861 Female, age 67, both hemispheres 194.3
2137 Male, age 80, left hemisphere 186.1
2436 Male, age 74, both hemispheres 166.5
2620 Female, age 94, left hemisphere 118.4
Parahippocampal cortex
nTPM: 186.7
2018 Male, age 76, both hemispheres 264.5
2250 Female, age 67, right hemisphere 226.5
1990 Female, age 91, right hemisphere 203.2
1850 Male, age 80, both hemispheres 193.3
2245 Female, age 91, both hemispheres 179.8
2692 Male, age 74, both hemispheres 179.7
1933 Female, age 85, both hemispheres 177.7
2532 Female, age 72, left hemisphere 161.1
2693 Female, age 94, both hemispheres 142.9
2622 Female, age 67, right hemisphere 138.8
Perirhinal gyrus
nTPM: 183.0
1847 Female, age 91, left hemisphere 211.8
1841 Female, age 85, right hemisphere 197.4
1794 Male, age 80, right hemisphere 176.9
2848 Male, age 76, right hemisphere 173.7
2521 Female, age 94, right hemisphere 154.9
Subiculum
nTPM: 197.8
1977 Female, age 85, both hemispheres 240.4
2042 Male, age 76, both hemispheres 231.1
2729 Female, age 91, right hemisphere 205.8
1901 Male, age 80, both hemispheres 200.3
2619 Male, age 74, both hemispheres 160.7
2438 Female, age 94, left hemisphere 148.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 956.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 956.6
Samples: 255

Max nTPM: 2312.8
Min nTPM: 390.7
Std nTPM: 318.4
Median nTPM: 896.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2312.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2254.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 2240.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2209.5
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 2066.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1779.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1742.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1730.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1663.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1632.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1621.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.7
FF:10169-103B7 60 years, female 21.8
FF:10153-102I9 76 years, female 11.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 2486.5
Pig sample Sample description nTPM
Subiculum
nTPM: 2044.1
Samples: 4

Max nTPM: 2991.2
Min nTPM: 1622.0
Sample A Female 2991.2
Sample B Female 1873.8
Sample C Male 1622.0
Sample D Male 1689.3
Dorsal hippocampus
nTPM: 2486.5
Samples: 4

Max nTPM: 3260.9
Min nTPM: 1742.1
Sample A Female 3260.9
Sample B Female 2022.7
Sample C Male 2920.4
Sample D Male 1742.1
Entorhinal cortex
nTPM: 1962.9
Samples: 4

Max nTPM: 2239.3
Min nTPM: 1526.1
Sample A Female 1957.1
Sample B Female 2128.9
Sample C Male 2239.3
Sample D Male 1526.1
Ventral hippocampus
nTPM: 2082.9
Samples: 4

Max nTPM: 2299.0
Min nTPM: 1775.9
Sample A Female 2000.2
Sample B Female 1775.9
Sample C Male 2299.0
Sample D Male 2256.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1015.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1014.1
Samples: 4

Max nTPM: 1046.4
Min nTPM: 953.0
Sample A Male 1011.8
Sample B Male 953.0
Sample C Female 1046.4
Sample D Female 1045.2
Hippocampal formation
nTPM: 1015.1
Samples: 4

Max nTPM: 1154.1
Min nTPM: 939.7
Sample A Male 1154.1
Sample B Male 939.7
Sample C Female 999.1
Sample D Female 967.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.6
100144177 Antisense, RP_110407_03_C10, Mouse strain C57BL/6J (56 days, male) 13.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo