HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:80.2 nTPM
HPA Brain:33.3 nTPM
GTEx:80.2 nTPM
FANTOM5:15.5 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:8.8 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047089Antibody HPA053624
Glial cells LowNot detected
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 33.3
Sample id Sample description nTPM
Hippocampus
nTPM: 32.4
1911 Female, age 85, right hemisphere 48.2
2529 Female, age 94, left hemisphere 46.2
2621 Female, age 67, right hemisphere 39.6
2148 Female, age 91, left hemisphere 22.2
1855 Male, age 76, left hemisphere 20.9
1898 Male, age 80, left hemisphere 17.2
Dentate gyrus
nTPM: 27.0
2530 Female, age 94, left hemisphere 31.1
2531 Female, age 67, both hemispheres 29.3
2246 Female, age 85, both hemispheres 28.5
1927 Female, age 91, both hemispheres 26.5
2010 Male, age 76, both hemispheres 24.6
2528 Male, age 74, both hemispheres 21.7
Entorhinal gyrus
nTPM: 19.7
2686 Male, age 75, right hemisphere 28.6
1787 Male, age 76, left hemisphere 25.3
2117 Female, age 91, right hemisphere 17.8
2613 Female, age 94, left hemisphere 17.8
2764 Male, age 80, right hemisphere 15.2
1938 Female, age 85, left hemisphere 13.6
Hippocampus, CA1
nTPM: 28.2
2082 Female, age 91, right hemisphere 36.9
2527 Male, age 74, both hemispheres 35.5
2749 Male, age 80, left hemisphere 28.5
1873 Female, age 85, both hemispheres 20.5
2045 Male, age 76, both hemispheres 19.8
Hippocampus, CA2
nTPM: 27.9
2113 Female, age 91, right hemisphere 38.5
1940 Female, age 85, left hemisphere 34.5
2249 Male, age 74, both hemispheres 31.5
2437 Female, age 94, left hemisphere 24.5
1892 Male, age 76, both hemispheres 20.4
1963 Male, age 80, left hemisphere 17.7
Hippocampus, CA3
nTPM: 33.3
2137 Male, age 80, left hemisphere 52.2
2861 Female, age 67, both hemispheres 36.4
1867 Male, age 76, both hemispheres 35.4
2436 Male, age 74, both hemispheres 32.3
1891 Female, age 85, both hemispheres 22.3
2620 Female, age 94, left hemisphere 21.2
Parahippocampal cortex
nTPM: 27.2
2245 Female, age 91, both hemispheres 47.6
2622 Female, age 67, right hemisphere 39.1
2250 Female, age 67, right hemisphere 31.6
2018 Male, age 76, both hemispheres 30.0
1990 Female, age 91, right hemisphere 24.7
2532 Female, age 72, left hemisphere 23.1
2693 Female, age 94, both hemispheres 22.2
2692 Male, age 74, both hemispheres 20.4
1933 Female, age 85, both hemispheres 19.1
1850 Male, age 80, both hemispheres 14.4
Perirhinal gyrus
nTPM: 20.7
2521 Female, age 94, right hemisphere 25.9
1841 Female, age 85, right hemisphere 21.0
2848 Male, age 76, right hemisphere 21.0
1794 Male, age 80, right hemisphere 19.3
1847 Female, age 91, left hemisphere 16.3
Subiculum
nTPM: 27.2
2042 Male, age 76, both hemispheres 44.1
1901 Male, age 80, both hemispheres 29.7
2438 Female, age 94, left hemisphere 27.4
2619 Male, age 74, both hemispheres 25.7
2729 Female, age 91, right hemisphere 20.9
1977 Female, age 85, both hemispheres 15.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 80.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 80.2
Samples: 255

Max nTPM: 312.2
Min nTPM: 16.5
Std nTPM: 44.9
Median nTPM: 72.0
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 312.2
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 275.4
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 257.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 231.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 230.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 211.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 199.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 189.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 179.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 173.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 171.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.5
FF:10153-102I9 76 years, female 19.6
FF:10169-103B7 60 years, female 11.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 16.8
Pig sample Sample description nTPM
Subiculum
nTPM: 12.0
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.6
Sample A Female 12.2
Sample B Female 10.6
Sample C Male 12.1
Sample D Male 12.9
Dorsal hippocampus
nTPM: 6.5
Samples: 4

Max nTPM: 9.1
Min nTPM: 5.3
Sample A Female 5.5
Sample B Female 5.3
Sample C Male 9.1
Sample D Male 6.0
Entorhinal cortex
nTPM: 16.8
Samples: 4

Max nTPM: 18.0
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 18.0
Sample C Male 17.7
Sample D Male 15.8
Ventral hippocampus
nTPM: 10.1
Samples: 4

Max nTPM: 19.6
Min nTPM: 4.9
Sample A Female 8.7
Sample B Female 7.3
Sample C Male 19.6
Sample D Male 4.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 8.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.8
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.4
Sample A Male 9.8
Sample B Male 7.6
Sample C Female 10.5
Sample D Female 7.4
Hippocampal formation
nTPM: 6.6
Samples: 4

Max nTPM: 9.3
Min nTPM: 5.5
Sample A Male 5.8
Sample B Male 5.5
Sample C Female 5.8
Sample D Female 9.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
71486976 Antisense, RP_050913_01_A10, Mouse strain C57BL/6J (56 days, male) 0.2

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