MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.7 nTPM
HPA Brain:22.1 nTPM
GTEx:71.7 nTPM
FANTOM5:25.5 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:14.4 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.7
2219 Male, age 76, both hemispheres 32.7
2586 Male, age 75, left hemisphere 24.8
2666 Male, age 74, left hemisphere 24.3
2019 Male, age 18, unknown 22.1
2828 Female, age 72, unknown 20.1
1830 Male, age 51, unknown 19.1
1870 Female, age 42, unknown 18.5
1827 Male, age 72, unknown 17.2
1833 Male, age 53, unknown 15.6
2411 Female, age 72, unknown 13.1
Dorsal raphe nucleus
nTPM: 15.7
2016 Female, age 72, unknown 17.0
2298 Female, age 72, unknown 16.7
1828 Male, age 53, unknown 16.5
2047 Male, age 72, unknown 16.4
2750 Male, age 76, both hemispheres 12.1
Inferior colliculus
nTPM: 20.0
1890 Male, age 53, unknown 35.0
2849 Male, age 72, unknown 17.1
2097 Female, age 72, unknown 15.4
1848 Female, age 42, unknown 12.3
Median raphe nucleus
nTPM: 20.6
2220 Male, age 76, midline 20.6
Periaquaductal grey, anterior
nTPM: 15.9
1795 Male, age 51, unknown 20.3
2502 Female, age 75, unknown 15.7
1947 Male, age 18, unknown 11.6
Periaquaductal grey, dorsal
nTPM: 22.1
2850 Male, age 76, both hemispheres 31.0
1831 Male, age 72, unknown 27.4
2464 Female, age 72, unknown 17.7
1840 Male, age 53, unknown 12.3
Periaquaductal grey, lateral
nTPM: 20.6
2140 Male, age 76, both hemispheres 26.8
2272 Male, age 74, both hemispheres 18.8
2053 Male, age 18, unknown 16.2
Pretectal area
nTPM: 21.6
1817 Female, age 42, unknown 27.0
2007 Male, age 72, unknown 26.3
1816 Male, age 51, unknown 25.0
1815 Male, age 53, unknown 24.7
1944 Female, age 72, unknown 24.0
2407 Male, age 75, both hemispheres 21.2
2667 Female, age 75, unknown 19.6
2224 Female, age 72, unknown 19.3
2825 Male, age 18, unknown 18.3
2273 Male, age 74, both hemispheres 16.3
2316 Male, age 76, right hemisphere 16.2
Red nucleus
nTPM: 21.6
2584 Male, age 75, left hemisphere 30.0
2785 Male, age 18, unknown 26.4
2769 Male, age 72, unknown 23.4
2227 Male, age 72, unknown 22.4
1865 Male, age 51, unknown 21.1
2823 Male, age 76, right hemisphere 21.0
1954 Female, age 42, unknown 20.9
2588 Male, age 74, left hemisphere 20.6
1904 Male, age 53, unknown 19.5
2503 Female, age 72, unknown 19.1
2725 Female, age 75, unknown 18.5
1821 Female, age 72, unknown 15.8
Substantia nigra
nTPM: 16.7
2665 Male, age 74, both hemispheres 25.0
2699 Male, age 18, unknown 23.3
2583 Male, age 75, right hemisphere 21.4
1889 Female, age 72, unknown 18.5
2590 Female, age 75, unknown 17.7
1851 Male, age 51, unknown 16.3
2409 Female, age 72, unknown 13.4
1941 Male, age 53, unknown 12.6
1916 Female, age 42, unknown 9.8
2241 Male, age 72, unknown 8.8
Superior colliculus
nTPM: 19.5
2664 Male, age 75, both hemispheres 26.8
2087 Female, age 72, unknown 25.2
1913 Female, age 42, unknown 21.6
1995 Male, age 72, unknown 21.3
2668 Female, age 75, unknown 20.9
2587 Male, age 74, left hemisphere 18.4
2261 Male, age 18, unknown 18.3
1796 Male, age 53, unknown 17.2
1839 Male, age 51, unknown 13.1
1895 Male, age 76, right hemisphere 12.0
Ventral tegmental area
nTPM: 18.7
2021 Male, age 53, unknown 25.5
1915 Female, age 42, unknown 20.0
2218 Male, age 76, both hemispheres 18.6
2223 Female, age 72, unknown 18.2
1942 Male, age 51, unknown 17.9
2410 Female, age 72, unknown 12.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.7
Samples: 183

Max nTPM: 2425.1
Min nTPM: 16.3
Std nTPM: 194.2
Median nTPM: 48.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2425.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1165.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 131.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 126.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 124.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 118.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 117.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 108.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 106.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 103.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 100.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.5
FF:10158-103A5 76 years, female 25.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.4
Samples: 4

Max nTPM: 53.0
Min nTPM: 13.0
Sample A Female 20.2
Sample B Female 53.0
Sample C Male 19.5
Sample D Male 13.0
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 12.7
Sample A Female 12.7
Sample B Female 14.5
Sample C Male 37.6
Sample D Male 15.1
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 13.1
Min nTPM: 10.3
Sample B Female 10.3
Sample C Male 13.1
Sample D Male 10.9
Superior colliculi
nTPM: 32.2
Samples: 4

Max nTPM: 52.9
Min nTPM: 15.7
Sample A Female 15.7
Sample B Female 35.1
Sample C Male 52.9
Sample D Male 25.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.4
Sample A Male 16.3
Sample B Male 14.4
Sample C Female 12.4
Sample D Female 14.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71486976 Antisense, RP_050913_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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