HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:53.6 nTPM
HPA Brain:74.4 nTPM
GTEx:53.6 nTPM
FANTOM5:108.5 Scaled Tags Per Million
Pig:77.7 nTPM
Mouse:94.0 nTPM
Allen mouse:6.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036485
Glial cells Medium
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 74.4
Sample id Sample description nTPM
Hippocampus
nTPM: 58.6
1898 Male, age 80, left hemisphere 85.8
1855 Male, age 76, left hemisphere 63.3
2621 Female, age 67, right hemisphere 62.5
1911 Female, age 85, right hemisphere 50.7
2148 Female, age 91, left hemisphere 45.9
2529 Female, age 94, left hemisphere 43.3
Dentate gyrus
nTPM: 58.7
2010 Male, age 76, both hemispheres 77.7
1927 Female, age 91, both hemispheres 72.7
2528 Male, age 74, both hemispheres 58.4
2246 Female, age 85, both hemispheres 56.8
2530 Female, age 94, left hemisphere 50.4
2531 Female, age 67, both hemispheres 36.1
Entorhinal gyrus
nTPM: 50.1
2764 Male, age 80, right hemisphere 61.3
1938 Female, age 85, left hemisphere 60.3
2117 Female, age 91, right hemisphere 50.6
1787 Male, age 76, left hemisphere 48.6
2613 Female, age 94, left hemisphere 47.3
2686 Male, age 75, right hemisphere 32.4
Hippocampus, CA1
nTPM: 74.4
2749 Male, age 80, left hemisphere 118.0
1873 Female, age 85, both hemispheres 76.0
2527 Male, age 74, both hemispheres 64.6
2045 Male, age 76, both hemispheres 60.1
2082 Female, age 91, right hemisphere 53.3
Hippocampus, CA2
nTPM: 64.3
1963 Male, age 80, left hemisphere 79.3
1892 Male, age 76, both hemispheres 77.6
2249 Male, age 74, both hemispheres 75.4
1940 Female, age 85, left hemisphere 55.8
2113 Female, age 91, right hemisphere 50.8
2437 Female, age 94, left hemisphere 47.1
Hippocampus, CA3
nTPM: 60.6
2137 Male, age 80, left hemisphere 87.3
2436 Male, age 74, both hemispheres 74.5
1867 Male, age 76, both hemispheres 70.1
1891 Female, age 85, both hemispheres 54.8
2620 Female, age 94, left hemisphere 46.2
2861 Female, age 67, both hemispheres 30.5
Parahippocampal cortex
nTPM: 54.8
1850 Male, age 80, both hemispheres 70.4
1933 Female, age 85, both hemispheres 62.1
2250 Female, age 67, right hemisphere 60.0
2018 Male, age 76, both hemispheres 59.7
2245 Female, age 91, both hemispheres 58.0
1990 Female, age 91, right hemisphere 56.6
2693 Female, age 94, both hemispheres 49.7
2692 Male, age 74, both hemispheres 46.4
2532 Female, age 72, left hemisphere 43.2
2622 Female, age 67, right hemisphere 42.3
Perirhinal gyrus
nTPM: 69.2
1847 Female, age 91, left hemisphere 84.3
1794 Male, age 80, right hemisphere 74.1
1841 Female, age 85, right hemisphere 68.0
2521 Female, age 94, right hemisphere 65.6
2848 Male, age 76, right hemisphere 54.2
Subiculum
nTPM: 55.4
1901 Male, age 80, both hemispheres 64.1
1977 Female, age 85, both hemispheres 62.6
2438 Female, age 94, left hemisphere 56.3
2729 Female, age 91, right hemisphere 52.2
2619 Male, age 74, both hemispheres 49.1
2042 Male, age 76, both hemispheres 48.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 53.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.6
Samples: 255

Max nTPM: 96.9
Min nTPM: 25.9
Std nTPM: 16.2
Median nTPM: 50.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 96.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 96.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 94.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 92.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 91.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 87.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 87.4
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 86.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 86.2
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 84.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 84.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 108.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 108.5
FF:10169-103B7 60 years, female 154.7
FF:10153-102I9 76 years, female 62.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 77.7
Pig sample Sample description nTPM
Subiculum
nTPM: 66.1
Samples: 4

Max nTPM: 82.6
Min nTPM: 57.4
Sample A Female 82.6
Sample B Female 57.4
Sample C Male 66.1
Sample D Male 58.2
Dorsal hippocampus
nTPM: 77.7
Samples: 4

Max nTPM: 97.7
Min nTPM: 63.5
Sample A Female 97.7
Sample B Female 82.0
Sample C Male 67.5
Sample D Male 63.5
Entorhinal cortex
nTPM: 66.3
Samples: 4

Max nTPM: 71.5
Min nTPM: 58.0
Sample A Female 71.5
Sample B Female 69.1
Sample C Male 66.7
Sample D Male 58.0
Ventral hippocampus
nTPM: 75.2
Samples: 4

Max nTPM: 86.3
Min nTPM: 52.2
Sample A Female 85.5
Sample B Female 52.2
Sample C Male 86.3
Sample D Male 76.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 94.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 85.0
Samples: 4

Max nTPM: 86.4
Min nTPM: 83.5
Sample A Male 86.4
Sample B Male 84.3
Sample C Female 83.5
Sample D Female 85.7
Hippocampal formation
nTPM: 94.1
Samples: 4

Max nTPM: 100.8
Min nTPM: 86.9
Sample A Male 90.3
Sample B Male 98.2
Sample C Female 100.8
Sample D Female 86.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.5
67765696 Antisense, RP_040916_01_C09, Mouse strain C57BL/6J (56 days, male) 6.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo