MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.3 nTPM
HPA Brain:64.7 nTPM
GTEx:58.3 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:73.4 nTPM
Mouse:94.0 nTPM
Allen mouse:2.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.4
1827 Male, age 72, unknown 58.6
2019 Male, age 18, unknown 57.8
2411 Female, age 72, unknown 56.2
1870 Female, age 42, unknown 49.3
2828 Female, age 72, unknown 48.3
1833 Male, age 53, unknown 47.2
2219 Male, age 76, both hemispheres 46.1
2586 Male, age 75, left hemisphere 44.8
1830 Male, age 51, unknown 43.1
2666 Male, age 74, left hemisphere 43.0
Dorsal raphe nucleus
nTPM: 60.1
2298 Female, age 72, unknown 78.4
1828 Male, age 53, unknown 61.2
2047 Male, age 72, unknown 60.8
2750 Male, age 76, both hemispheres 53.0
2016 Female, age 72, unknown 47.3
Inferior colliculus
nTPM: 55.5
2097 Female, age 72, unknown 69.6
1848 Female, age 42, unknown 53.6
1890 Male, age 53, unknown 51.2
2849 Male, age 72, unknown 47.5
Median raphe nucleus
nTPM: 64.3
2220 Male, age 76, midline 64.3
Periaquaductal grey, anterior
nTPM: 55.8
1795 Male, age 51, unknown 58.7
2502 Female, age 75, unknown 55.7
1947 Male, age 18, unknown 53.2
Periaquaductal grey, dorsal
nTPM: 51.7
2850 Male, age 76, both hemispheres 59.5
1840 Male, age 53, unknown 52.3
2464 Female, age 72, unknown 48.1
1831 Male, age 72, unknown 47.0
Periaquaductal grey, lateral
nTPM: 57.1
2272 Male, age 74, both hemispheres 67.4
2053 Male, age 18, unknown 52.4
2140 Male, age 76, both hemispheres 51.7
Pretectal area
nTPM: 64.7
2273 Male, age 74, both hemispheres 77.0
1817 Female, age 42, unknown 76.8
1816 Male, age 51, unknown 76.5
1944 Female, age 72, unknown 75.6
2007 Male, age 72, unknown 71.9
2224 Female, age 72, unknown 71.8
1815 Male, age 53, unknown 66.8
2667 Female, age 75, unknown 59.5
2825 Male, age 18, unknown 48.8
2316 Male, age 76, right hemisphere 46.1
2407 Male, age 75, both hemispheres 40.6
Red nucleus
nTPM: 51.0
1821 Female, age 72, unknown 68.3
2725 Female, age 75, unknown 59.0
2785 Male, age 18, unknown 55.5
1954 Female, age 42, unknown 51.8
1904 Male, age 53, unknown 51.5
2769 Male, age 72, unknown 50.6
1865 Male, age 51, unknown 50.5
2227 Male, age 72, unknown 50.1
2503 Female, age 72, unknown 48.7
2823 Male, age 76, right hemisphere 48.3
2588 Male, age 74, left hemisphere 39.1
2584 Male, age 75, left hemisphere 38.9
Substantia nigra
nTPM: 60.4
1916 Female, age 42, unknown 81.5
1889 Female, age 72, unknown 72.7
1851 Male, age 51, unknown 68.3
1941 Male, age 53, unknown 63.6
2409 Female, age 72, unknown 63.2
2241 Male, age 72, unknown 62.5
2699 Male, age 18, unknown 53.1
2590 Female, age 75, unknown 51.0
2665 Male, age 74, both hemispheres 46.3
2583 Male, age 75, right hemisphere 41.9
Superior colliculus
nTPM: 52.3
2261 Male, age 18, unknown 65.6
2087 Female, age 72, unknown 65.1
2587 Male, age 74, left hemisphere 55.1
2668 Female, age 75, unknown 54.8
1796 Male, age 53, unknown 54.0
1895 Male, age 76, right hemisphere 50.4
1913 Female, age 42, unknown 47.5
1839 Male, age 51, unknown 47.1
1995 Male, age 72, unknown 44.8
2664 Male, age 75, both hemispheres 38.2
Ventral tegmental area
nTPM: 62.3
2410 Female, age 72, unknown 78.5
2218 Male, age 76, both hemispheres 71.0
1915 Female, age 42, unknown 63.7
2021 Male, age 53, unknown 54.2
2223 Female, age 72, unknown 54.2
1942 Male, age 51, unknown 52.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.3
Samples: 183

Max nTPM: 106.2
Min nTPM: 25.4
Std nTPM: 15.5
Median nTPM: 55.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 106.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 106.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 105.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 103.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 99.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 98.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 94.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 93.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 92.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 90.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 88.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.6
FF:10158-103A5 76 years, female 52.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.3
Samples: 4

Max nTPM: 91.7
Min nTPM: 39.9
Sample A Female 91.7
Sample B Female 52.5
Sample C Male 76.9
Sample D Male 39.9
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 81.6
Min nTPM: 52.3
Sample A Female 57.1
Sample B Female 52.3
Sample C Male 81.6
Sample D Male 73.3
Periaqueductal gray
nTPM: 56.5
Samples: 3

Max nTPM: 67.7
Min nTPM: 50.2
Sample B Female 51.5
Sample C Male 67.7
Sample D Male 50.2
Superior colliculi
nTPM: 73.4
Samples: 4

Max nTPM: 87.7
Min nTPM: 54.0
Sample A Female 87.7
Sample B Female 54.0
Sample C Male 87.2
Sample D Male 64.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.0
Samples: 4

Max nTPM: 98.5
Min nTPM: 86.6
Sample A Male 94.1
Sample B Male 96.7
Sample C Female 86.6
Sample D Female 98.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
67765696 Antisense, RP_040916_01_C09, Mouse strain C57BL/6J (56 days, male) 2.6

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