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CALM1
HPA
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Gene name
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Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
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Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
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Cluster
Location
Searches
Location
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Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CALM1
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
ISOLATED
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CALM1
Synonyms CALML2, CAMI, DD132, PHKD, PHKD1
Gene descriptioni

Full gene name according to HGNC.

Calmodulin 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Disease related genes
FDA approved drug targets
Human disease related genes
Metabolic proteins
RAS pathway related proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Transcription regulation (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Esophageal apical cells, Respiratory ciliated cells)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Brain - Synaptic signal transduction (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Cytosol
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 14
Cytoband q32.11
Chromosome location (bp) 90396502 - 90408268
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000198668 (version 109)
Entrez gene 801
HGNC HGNC:1442
UniProt P0DP23
GeneCards CALM1
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Brain - Synaptic signal transduction

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 44
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ASPM11660
ATP2B1502380
ATP2B4131140
CALML3246342
CAMK123523
CAMKK220840
CCDC8313240
CCP1109927120
CDC423033160151
CEP97331870
CUL76155312
DENND4A748140
DENND4C601090
FECH241150
IDH119720
IQCB1511830
IQGAP110217582
IQGAP3467530
IQSEC211400
KIF1A15840
MYL611825140
MYO1B3226130
MYO1C3234110
MYO9B206150
OBSL1426660
OSTF149743
PHKA120240
PHKA2233520
PHKB33640
PHKG2437116
PML121515950
PPP3CA242230
PPP3CB421050
RALA431640
SH2B132830
TBC1D18241180
TBC1D48315130
TRIM24635280
UBE3B115223
UNC13B11731
VPS13A30960
VPS13C608120
YWHAB183933372450
YWHAE23512338332412
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 2 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
IDH119720
IQSEC211400
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 117
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACE2101327800
AKAP9252200
AKT15314319724
ANLN1056820
AR344225400
ARHGEF7141527100
ARNT463400
ASPM11660
ATP2B1502380
ATP2B4131140
AURKB132097318
CALML3246342
CAMK123523
CAMK2B4191000
CAMK2D5131800
CAMK2G121720
CAMKK220840
CCDC8313240
CCNF4462401
CCP1109927120
CDC423033160151
CDC5L40481321829
CEP290692720
CEP97331870
CNN105200
CSNK2A1996724918422
CSNK2B583111915437
CUL3404577120
CUL76155312
DAPK1892701
DDX39B2415110440
DDX4912601
DDX52919105410
DENND4A748140
DENND4C601090
EGFR18727545806
ERBB2325012000
ESR1345947900
ESR2266000
FAS582100
FECH241150
FKBP312903
FKBP8213366460
GEM088200
GP612200
GRB78132000
H2AX2230128039
HYPK451703
IDH119720
IQCB1511830
IQGAP110217582
IQGAP2331030
IQGAP3467530
IQSEC211400
KCNN4071031
KCNQ200200
KIF1A15840
KIF1B352000
KRAS115414160
MAPT111918800
MIP035100
MYC6690126920
MYL611825140
MYL6B521181
MYLK01300
MYLK216601
MYO1B3226130
MYO1C3234110
MYO1E2213210
MYO9B206150
NOS2011000
NOS34411400
OBSL1426660
OSTF149743
PCNT142200
PHKA120240
PHKA2233520
PHKB33640
PHKG2437116
PML121515950
PPEF104100
PPEF200100
PPP3CA242230
PPP3CB421050
PPP3R136606
RAC13361111150
RALA431640
RALB36605
RCHY16172600
RRAD11600
RYR111800
RYR2121000
SCN5A05500
SEC61A17333200
SH2B132830
SLC9A1341102
SNCA2412615400
SUMO2141810700
SYK8164000
TBC1D18241180
TBC1D48315130
TRIM13001300
TRIM24635280
TRPV100500
TRPV601300
TSC29132850
UBC355946340
UBE3A8811710
UBE3B115223
UBR4013000
UNC13B11731
VPS13A30960
VPS13C608120
YAP13132304100
YWHAB183933372450
YWHAE23512338332412
YWHAQ9061318796
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 71
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ABCD3432072
ABHD10117412
ACTR214343614
ANKS6323340
ARHGEF128317150
ARPC1A910132510
ASPM11660
ATP2B1502380
ATP2B4131140
BSG458780
CALML3246342
CAMK123523
CAMKK220840
CCDC8313240
CCP1109927120
CDC423033160151
CDK5RAP2442160
CEP97331870
CETN27814218
CETN3297119
CUL76155312
DENND4A748140
DENND4C601090
ESCO100030
FBXO452121310
FECH241150
GADD45GIP1159022473
INF210990
IQCB1511830
IQGAP110217582
IQGAP3467530
KIF1A15840
LRCH3231490
LRPPRC776882
MRPL5391314548
MYL100230
MYL611825140
MYO1B3226130
MYO1C3234110
MYO1D1116416
MYO1F13234
MYO612657150
MYO9B206150
NCAPD3131218
OBSL1426660
OSTF149743
PHKA120240
PHKA2233520
PHKB33640
PHKG2437116
PLEKHH211230
PML121515950
PPP3CA242230
PPP3CB421050
PPP3R201132
RALA431640
SH2B132830
SYDE110320
TBC1D18241180
TBC1D48315130
TOM1321250
TOM1L222453
TRIM24635280
UBE3B115223
UBE3C41192621
UNC13B11731
VPS13A30960
VPS13C608120
YWHAB183933372450
YWHAE23512338332412
YWHAZ2221643483248
Show allShow less
CALM1 has no defined protein interactions in BioPlex.
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene CALM1 is associated with 1 reactions in 1 different subsystems, and present in the compartments: Cytosol. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Isolated Cytosol, Mitochondria, Peroxisome, Endoplasmic reticulum, Extracellular, Nucleus, Golgi apparatus 524 320 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CALM1-201 P0DP23
B4DJ51
Metabolic proteins
Predicted intracellular proteins
RAS pathway related proteins
Disease related genes
FDA approved drug targets
Human disease related genes
Mapped to neXtProt
Show all
149 aa
16.8 kDa
No 0
CALM1-202 Q96HY3
Metabolic proteins
Predicted intracellular proteins
RAS pathway related proteins
Human disease related genes
113 aa
12.9 kDa
No 0
CALM1-203 Q96HY3
Metabolic proteins
Predicted intracellular proteins
RAS pathway related proteins
Human disease related genes
113 aa
12.9 kDa
No 0
CALM1-205 Q96HY3
Metabolic proteins
Predicted intracellular proteins
RAS pathway related proteins
Human disease related genes
113 aa
12.9 kDa
No 0
CALM1-214 G3V361
Metabolic proteins
Predicted intracellular proteins
RAS pathway related proteins
Human disease related genes
98 aa
11.1 kDa
No 0
CALM1-216 Q96HY3
Metabolic proteins
Predicted intracellular proteins
RAS pathway related proteins
Human disease related genes
113 aa
12.9 kDa
No 0
CALM1-217 Q96HY3
Metabolic proteins
Predicted intracellular proteins
RAS pathway related proteins
Human disease related genes
113 aa
12.9 kDa
No 0
Show allShow less

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