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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:348.2 nTPM
HPA Brain:756.4 nTPM
GTEx:348.2 nTPM
FANTOM5:1030.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

756.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 632.0
2048 Male, age 55, midline 665.2
2565 Male, age 75, midline 659.8
1981 Female, age 72, midline 627.0
2194 Female, age 79, both hemispheres 621.4
2816 Male, age 47, midline 586.6
Cervical spinal cord, dorsal horn
nTPM: 756.4
2297 Male, age 75, both hemispheres 940.2
1877 Male, age 55, unknown 786.8
2069 Male, age 47, both hemispheres 736.0
2173 Female, age 72, unknown 724.5
2721 Male, age 90, both hemispheres 696.6
2296 Male, age 66, both hemispheres 654.0
Cervical spinal cord, ventral horn
nTPM: 733.0
2480 Male, age 75, both hemispheres 965.9
2809 Male, age 90, both hemispheres 766.8
2820 Female, age 79, both hemispheres 755.0
2295 Male, age 66, both hemispheres 749.1
2068 Male, age 55, unknown 597.1
2098 Female, age 72, unknown 564.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

348.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 348.2
Samples: 204

Max nTPM: 628.5
Min nTPM: 204.2
Std nTPM: 65.7
Median nTPM: 342.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 628.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 599.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 566.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 565.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 558.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 534.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 487.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 486.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 462.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 441.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 438.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 438.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 436.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 436.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 436.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 431.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 426.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 425.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 422.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 416.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 410.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 409.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 408.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 408.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 404.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 404.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 398.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 398.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 397.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 397.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 393.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 392.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 392.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 392.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 391.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 391.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 390.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 390.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 390.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 389.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 389.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 388.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 388.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 388.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 386.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 386.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 385.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 384.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 383.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 383.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 383.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 382.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 381.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 381.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 381.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 380.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 380.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 379.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 379.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 377.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 377.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 376.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 376.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 375.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 375.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 374.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 374.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 374.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 374.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 373.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 373.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 366.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 365.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 363.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 363.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 362.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 362.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 362.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 361.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 360.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 359.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 359.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 358.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 358.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 357.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 357.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 357.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 356.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 353.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 352.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 350.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 350.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 349.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 349.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 349.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 348.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 346.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 345.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 345.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 343.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 343.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 343.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 342.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 342.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 341.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 341.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 340.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 340.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 339.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 338.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 336.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 335.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 335.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 335.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 334.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 334.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 333.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 333.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 333.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 332.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 332.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 332.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 332.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 331.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 331.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 331.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 330.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 329.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 327.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 327.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 326.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 326.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 325.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 325.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 324.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 323.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 323.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 320.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 320.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 319.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 319.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 318.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 317.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 316.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 316.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 315.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 313.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 313.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 311.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 310.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 309.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 309.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 308.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 308.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 306.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 305.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 305.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 305.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 304.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 304.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 302.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 302.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 301.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 300.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 299.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 295.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 294.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 294.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 290.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 289.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 287.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 286.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 284.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 283.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 283.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 282.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 282.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 282.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 281.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 280.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 278.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 278.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 276.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 273.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 272.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 267.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 265.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 262.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 260.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 256.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 254.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 252.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 251.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 249.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 249.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 245.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 243.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 242.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 240.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 236.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 219.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 217.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 205.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 204.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1030.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1030.0
FF:10181-103D1 60 years, female 1152.2
FF:10159-103A6 76 years, female 907.9

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