MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12947.1 nTPM
HPA Brain:40133.4 nTPM
GTEx:12947.1 nTPM
Pig:6201.7 nTPM
Mouse:100.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40133.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24146.2
2219 Male, age 76, both hemispheres 49685.9
2666 Male, age 74, left hemisphere 28063.0
2828 Female, age 72, unknown 27284.9
1833 Male, age 53, unknown 26005.3
1830 Male, age 51, unknown 25948.2
2586 Male, age 75, left hemisphere 25796.6
1827 Male, age 72, unknown 17820.4
1870 Female, age 42, unknown 17668.9
2019 Male, age 18, unknown 12871.5
2411 Female, age 72, unknown 10316.8
Dorsal raphe nucleus
nTPM: 12679.7
1828 Male, age 53, unknown 21680.9
2750 Male, age 76, both hemispheres 15952.3
2047 Male, age 72, unknown 10799.0
2016 Female, age 72, unknown 9532.2
2298 Female, age 72, unknown 5433.9
Inferior colliculus
nTPM: 19154.2
2849 Male, age 72, unknown 41372.5
1890 Male, age 53, unknown 16074.5
1848 Female, age 42, unknown 12034.8
2097 Female, age 72, unknown 7135.2
Median raphe nucleus
nTPM: 40133.4
2220 Male, age 76, midline 40133.4
Periaquaductal grey, anterior
nTPM: 14455.2
2502 Female, age 75, unknown 19514.5
1795 Male, age 51, unknown 12825.9
1947 Male, age 18, unknown 11025.3
Periaquaductal grey, dorsal
nTPM: 22147.1
2850 Male, age 76, both hemispheres 42176.8
1831 Male, age 72, unknown 18635.6
2464 Female, age 72, unknown 17261.5
1840 Male, age 53, unknown 10514.5
Periaquaductal grey, lateral
nTPM: 12024.4
2140 Male, age 76, both hemispheres 18010.9
2053 Male, age 18, unknown 10180.3
2272 Male, age 74, both hemispheres 7882.1
Pretectal area
nTPM: 19269.4
1816 Male, age 51, unknown 30007.2
1815 Male, age 53, unknown 28582.0
2667 Female, age 75, unknown 26344.7
1817 Female, age 42, unknown 25962.0
1944 Female, age 72, unknown 25257.0
2825 Male, age 18, unknown 21096.4
2007 Male, age 72, unknown 16409.2
2407 Male, age 75, both hemispheres 12608.6
2224 Female, age 72, unknown 10613.6
2273 Male, age 74, both hemispheres 7602.0
2316 Male, age 76, right hemisphere 7480.9
Red nucleus
nTPM: 19603.0
2503 Female, age 72, unknown 26442.8
2584 Male, age 75, left hemisphere 25115.5
2588 Male, age 74, left hemisphere 23296.9
2823 Male, age 76, right hemisphere 23186.9
1954 Female, age 42, unknown 22846.1
2227 Male, age 72, unknown 19300.3
2785 Male, age 18, unknown 19094.3
1904 Male, age 53, unknown 17343.0
2769 Male, age 72, unknown 16698.5
1865 Male, age 51, unknown 14993.2
2725 Female, age 75, unknown 14064.5
1821 Female, age 72, unknown 12854.1
Substantia nigra
nTPM: 24562.1
2665 Male, age 74, both hemispheres 55024.5
2699 Male, age 18, unknown 44482.1
1916 Female, age 42, unknown 25750.3
1941 Male, age 53, unknown 24232.5
2409 Female, age 72, unknown 18158.0
2583 Male, age 75, right hemisphere 18109.9
2241 Male, age 72, unknown 16454.0
2590 Female, age 75, unknown 14932.2
1889 Female, age 72, unknown 14654.8
1851 Male, age 51, unknown 13822.3
Superior colliculus
nTPM: 17109.8
2664 Male, age 75, both hemispheres 28275.7
2087 Female, age 72, unknown 20407.5
1913 Female, age 42, unknown 18891.9
1839 Male, age 51, unknown 18226.2
2261 Male, age 18, unknown 16126.6
2587 Male, age 74, left hemisphere 15892.3
2668 Female, age 75, unknown 15480.3
1995 Male, age 72, unknown 13357.5
1895 Male, age 76, right hemisphere 12922.3
1796 Male, age 53, unknown 11517.9
Ventral tegmental area
nTPM: 20406.2
2218 Male, age 76, both hemispheres 35145.5
2223 Female, age 72, unknown 24752.6
1942 Male, age 51, unknown 18806.3
1915 Female, age 42, unknown 15541.5
2410 Female, age 72, unknown 15039.9
2021 Male, age 53, unknown 13151.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12947.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12947.1
Samples: 183

Max nTPM: 81905.9
Min nTPM: 871.9
Std nTPM: 12016.3
Median nTPM: 8649.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 81905.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 65871.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 58110.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 55922.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 47622.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 46303.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 40974.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 39586.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38171.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37523.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 36475.1
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6201.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6057.1
Samples: 4

Max nTPM: 9353.7
Min nTPM: 2968.1
Sample A Female 9353.7
Sample B Female 5327.1
Sample C Male 6579.6
Sample D Male 2968.1
Midbrain
nTPM: 6201.7
Samples: 4

Max nTPM: 8640.5
Min nTPM: 3157.5
Sample A Female 6215.7
Sample B Female 8640.5
Sample C Male 6793.1
Sample D Male 3157.5
Periaqueductal gray
nTPM: 4990.9
Samples: 3

Max nTPM: 5790.2
Min nTPM: 3772.0
Sample B Female 5790.2
Sample C Male 5410.5
Sample D Male 3772.0
Superior colliculi
nTPM: 4807.9
Samples: 4

Max nTPM: 7356.4
Min nTPM: 673.4
Sample A Female 7356.4
Sample B Female 673.4
Sample C Male 6500.2
Sample D Male 4701.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 100.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.9
Samples: 4

Max nTPM: 112.6
Min nTPM: 88.8
Sample A Male 112.6
Sample B Male 111.2
Sample C Female 90.9
Sample D Female 88.8

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