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MT-ND6
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  • SUMMARY

  • TISSUE

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  • MT-ND6
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:9693.8 nTPM
HPA Brain:14622.9 nTPM
GTEx:9693.8 nTPM
Pig:5328.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14622.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 9341.7
2565 Male, age 75, midline 15687.5
2194 Female, age 79, both hemispheres 11378.3
2816 Male, age 47, midline 9404.9
2048 Male, age 55, midline 6955.8
1981 Female, age 72, midline 3281.8
Cervical spinal cord, dorsal horn
nTPM: 6695.3
2721 Male, age 90, both hemispheres 13027.2
2297 Male, age 75, both hemispheres 11645.1
1877 Male, age 55, unknown 6653.8
2069 Male, age 47, both hemispheres 3837.4
2296 Male, age 66, both hemispheres 2610.5
2173 Female, age 72, unknown 2397.9
Cervical spinal cord, ventral horn
nTPM: 14622.9
2480 Male, age 75, both hemispheres 29090.8
2820 Female, age 79, both hemispheres 19941.8
2295 Male, age 66, both hemispheres 13359.0
2068 Male, age 55, unknown 13327.0
2809 Male, age 90, both hemispheres 10321.3
2098 Female, age 72, unknown 1697.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9693.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 9693.8
Samples: 204

Max nTPM: 92992.1
Min nTPM: 981.5
Std nTPM: 12036.0
Median nTPM: 5492.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 92992.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 79046.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 68206.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 44216.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 42826.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 41284.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 40272.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 39063.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 37483.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 37394.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 28627.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 27895.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 27473.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 25681.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 22441.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 21238.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 21084.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 20758.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 20451.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 18980.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 18743.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 18728.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 18191.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 17806.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 17501.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 17128.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 17052.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 17038.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 16945.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 16795.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 16065.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 15937.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 15798.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 15758.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 15592.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 15416.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 15370.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 14847.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 14428.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 14376.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 13884.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 13678.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 13039.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 12996.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 12949.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 12400.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 12324.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 12229.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 12184.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 12055.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 12022.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 11915.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 11852.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 11783.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 11767.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 11482.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 10732.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 10640.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 10621.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10544.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 10495.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 10022.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 9896.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 9709.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 9354.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 9346.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 8950.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 8879.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 8861.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 8855.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 8808.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 8703.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 8611.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 8592.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 8175.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 8121.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 7992.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 7965.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 7881.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 7726.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 7627.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 7593.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 7382.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 7112.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 7005.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 6911.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6824.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 6566.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 6385.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 6253.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 6152.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 6129.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 5942.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 5848.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 5807.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 5778.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 5649.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 5628.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 5606.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 5601.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 5521.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 5510.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 5474.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 5441.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 5435.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 5421.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 5417.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 5401.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 5368.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 5337.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 5247.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 5151.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 5106.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 5065.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 5043.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 5027.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 5024.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 5012.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4942.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 4868.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 4867.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 4848.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 4722.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 4689.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 4610.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 4457.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 4448.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 4405.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 4372.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 4301.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 4246.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4211.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 4083.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 4077.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 3905.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3858.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3797.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3784.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3742.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 3720.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 3462.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3459.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3435.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3411.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 3379.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 3336.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3318.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 3251.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3187.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 3144.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3109.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3095.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3094.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 3048.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 3035.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 3002.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 2972.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2917.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2879.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 2824.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2810.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 2766.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 2754.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2747.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2724.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2718.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 2684.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2672.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2667.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2619.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 2596.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 2582.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2545.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2526.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 2481.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2460.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2447.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2340.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2322.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 2306.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2297.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2264.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2216.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2183.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 2003.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1966.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1932.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1804.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1763.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1738.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1735.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1685.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1591.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1525.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1473.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1436.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1371.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1320.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1317.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1294.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1287.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1269.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1163.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 981.5
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SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5328.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 4757.8
Samples: 4

Max nTPM: 6854.8
Min nTPM: 3019.2
Sample A Female 6854.8
Sample B Female 5164.8
Sample C Male 3019.2
Sample D Male 3992.3
Ventral spinal cord
nTPM: 5329.0
Samples: 4

Max nTPM: 9965.2
Min nTPM: 1987.1
Sample A Female 9965.2
Sample B Female 1987.1
Sample C Male 4791.3
Sample D Male 4572.2

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