A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.1
nTPM
Monaco:
45.3
nTPM
Schmiedel:
21.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.1
HPA sample
nTPM
Classical monocyte nTPM: 18.0
Samples: 6
Max nTPM: 20.0
Min nTPM: 14.9
P10809_1003
17.7
P10809_1020
20.0
P10809_1039
17.3
P10809_1058
14.9
P10809_1080
18.8
P10809_1107
19.1
Intermediate monocyte nTPM: 14.7
Samples: 6
Max nTPM: 18.2
Min nTPM: 10.7
P10809_1004
14.6
P10809_1023
10.7
P10809_1042
18.2
P10809_1061
17.5
P10809_1081
11.9
P10809_1108
15.1
Non-classical monocyte nTPM: 19.1
Samples: 5
Max nTPM: 39.6
Min nTPM: 10.8
P10809_1005
15.5
P10809_1053
13.5
P10809_1072
39.6
P10809_1082
10.8
P10809_1109
16.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.3
Monaco sample
nTPM
Classical monocyte nTPM: 45.3
Samples: 4
Max nTPM: 62.5
Min nTPM: 30.8
RHH5313_R3680
62.5
RHH5221_R3593
35.3
RHH5250_R3622
30.8
RHH5279_R3651
52.5
Intermediate monocyte nTPM: 36.6
Samples: 4
Max nTPM: 46.3
Min nTPM: 28.8
RHH5314_R3681
46.3
RHH5222_R3594
31.7
RHH5251_R3623
28.8
RHH5280_R3652
39.5
Non-classical monocyte nTPM: 40.4
Samples: 4
Max nTPM: 45.8
Min nTPM: 33.3
RHH5315_R3682
45.8
RHH5223_R3595
33.3
RHH5252_R3624
43.4
RHH5281_R3653
38.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.8
Schmiedel sample id
TPM
Classical monocyte TPM: 21.8
Samples: 91
Max TPM: 30.8
Min TPM: 11.9
MONOCYTES_1
30.8
MONOCYTES_2
30.5
MONOCYTES_3
30.1
MONOCYTES_4
29.1
MONOCYTES_5
28.5
MONOCYTES_6
28.4
MONOCYTES_7
28.4
MONOCYTES_8
28.3
MONOCYTES_9
27.9
MONOCYTES_10
27.8
MONOCYTES_11
26.3
MONOCYTES_12
26.2
MONOCYTES_13
26.2
MONOCYTES_14
26.1
MONOCYTES_15
25.8
MONOCYTES_16
25.7
MONOCYTES_17
25.5
MONOCYTES_18
25.4
MONOCYTES_19
25.3
MONOCYTES_20
25.0
MONOCYTES_21
24.8
MONOCYTES_22
24.7
MONOCYTES_23
24.6
MONOCYTES_24
24.4
MONOCYTES_25
24.2
MONOCYTES_26
24.1
MONOCYTES_27
24.0
MONOCYTES_28
23.8
MONOCYTES_29
23.5
MONOCYTES_30
23.3
MONOCYTES_31
23.1
MONOCYTES_32
23.1
MONOCYTES_33
22.9
MONOCYTES_34
22.8
MONOCYTES_35
22.7
MONOCYTES_36
22.7
MONOCYTES_37
22.6
MONOCYTES_38
22.4
MONOCYTES_39
22.3
MONOCYTES_40
22.2
MONOCYTES_41
22.2
MONOCYTES_42
22.2
MONOCYTES_43
22.1
MONOCYTES_44
22.1
MONOCYTES_45
22.0
MONOCYTES_46
21.8
MONOCYTES_47
21.8
MONOCYTES_48
21.8
MONOCYTES_49
21.7
MONOCYTES_50
21.7
MONOCYTES_51
21.6
MONOCYTES_52
21.6
MONOCYTES_53
21.5
MONOCYTES_54
21.2
MONOCYTES_55
21.2
MONOCYTES_56
21.1
MONOCYTES_57
21.1
MONOCYTES_58
20.8
MONOCYTES_59
20.6
MONOCYTES_60
20.6
MONOCYTES_61
20.6
MONOCYTES_62
20.6
MONOCYTES_63
20.5
MONOCYTES_64
20.4
MONOCYTES_65
20.4
MONOCYTES_66
20.2
MONOCYTES_67
18.8
MONOCYTES_68
18.6
MONOCYTES_69
18.6
MONOCYTES_70
18.5
MONOCYTES_71
18.4
MONOCYTES_72
18.4
MONOCYTES_73
18.3
MONOCYTES_74
18.3
MONOCYTES_75
18.3
MONOCYTES_76
18.1
MONOCYTES_77
18.0
MONOCYTES_78
17.2
MONOCYTES_79
17.0
MONOCYTES_80
16.8
MONOCYTES_81
16.8
MONOCYTES_82
16.6
MONOCYTES_83
16.5
MONOCYTES_84
16.2
MONOCYTES_85
15.8
MONOCYTES_86
15.5
MONOCYTES_87
15.0
MONOCYTES_88
14.7
MONOCYTES_89
13.8
MONOCYTES_90
12.1
MONOCYTES_91
11.9
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Non-classical monocyte TPM: 19.2
Samples: 90
Max TPM: 28.7
Min TPM: 6.8
M2_1
28.7
M2_2
27.6
M2_3
27.1
M2_4
26.7
M2_5
26.6
M2_6
25.2
M2_7
25.1
M2_8
25.1
M2_9
25.0
M2_10
24.7
M2_11
23.6
M2_12
23.5
M2_13
23.5
M2_14
23.5
M2_15
23.2
M2_16
23.2
M2_17
23.1
M2_18
23.1
M2_19
23.0
M2_20
22.8
M2_21
22.7
M2_22
22.1
M2_23
22.1
M2_24
22.0
M2_25
21.9
M2_26
21.8
M2_27
21.6
M2_28
21.6
M2_29
21.5
M2_30
21.2
M2_31
21.2
M2_32
21.2
M2_33
21.1
M2_34
20.8
M2_35
20.6
M2_36
20.6
M2_37
20.6
M2_38
20.4
M2_39
20.4
M2_40
20.3
M2_41
20.3
M2_42
20.2
M2_43
20.1
M2_44
19.7
M2_45
19.7
M2_46
19.6
M2_47
19.5
M2_48
19.3
M2_49
19.1
M2_50
18.8
M2_51
18.7
M2_52
18.6
M2_53
18.5
M2_54
18.3
M2_55
18.2
M2_56
18.2
M2_57
18.1
M2_58
18.1
M2_59
18.0
M2_60
17.9
M2_61
17.9
M2_62
17.6
M2_63
17.5
M2_64
17.4
M2_65
17.3
M2_66
17.2
M2_67
17.1
M2_68
17.1
M2_69
16.8
M2_70
16.7
M2_71
15.8
M2_72
15.7
M2_73
15.6
M2_74
15.5
M2_75
14.5
M2_76
14.3
M2_77
13.8
M2_78
13.6
M2_79
13.5
M2_80
13.2
M2_81
13.0
M2_82
12.8
M2_83
12.7
M2_84
11.9
M2_85
11.6
M2_86
11.2
M2_87
10.8
M2_88
10.8
M2_89
7.8
M2_90
6.8
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