We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MT-CO1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MT-CO1
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:94670.0 nTPM
HPA Brain:110698.4 nTPM
GTEx:94670.0 nTPM
Pig:95675.0 nTPM
Mouse:30965.9 nTPM
Allen mouse:24.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110698.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94668.4
2586 Male, age 75, left hemisphere 170728.9
2828 Female, age 72, unknown 123902.9
2666 Male, age 74, left hemisphere 109389.1
2219 Male, age 76, both hemispheres 106318.7
1833 Male, age 53, unknown 84757.0
2019 Male, age 18, unknown 81382.8
1870 Female, age 42, unknown 76935.9
1827 Male, age 72, unknown 75573.5
1830 Male, age 51, unknown 72726.2
2411 Female, age 72, unknown 44969.3
Dorsal raphe nucleus
nTPM: 68582.1
1828 Male, age 53, unknown 95516.2
2047 Male, age 72, unknown 73296.9
2750 Male, age 76, both hemispheres 68759.1
2016 Female, age 72, unknown 65085.3
2298 Female, age 72, unknown 40253.1
Inferior colliculus
nTPM: 74316.3
2849 Male, age 72, unknown 86769.0
1890 Male, age 53, unknown 85100.2
1848 Female, age 42, unknown 75408.3
2097 Female, age 72, unknown 49987.5
Median raphe nucleus
nTPM: 99562.5
2220 Male, age 76, midline 99562.5
Periaquaductal grey, anterior
nTPM: 68970.8
2502 Female, age 75, unknown 82830.4
1795 Male, age 51, unknown 65077.9
1947 Male, age 18, unknown 59004.1
Periaquaductal grey, dorsal
nTPM: 69861.9
2850 Male, age 76, both hemispheres 82571.8
1831 Male, age 72, unknown 70365.3
2464 Female, age 72, unknown 63745.3
1840 Male, age 53, unknown 62765.4
Periaquaductal grey, lateral
nTPM: 48951.4
2053 Male, age 18, unknown 57686.9
2140 Male, age 76, both hemispheres 51517.4
2272 Male, age 74, both hemispheres 37649.9
Pretectal area
nTPM: 87017.2
1817 Female, age 42, unknown 128864.4
1816 Male, age 51, unknown 127054.3
1944 Female, age 72, unknown 123725.0
2667 Female, age 75, unknown 115742.6
2007 Male, age 72, unknown 110940.1
1815 Male, age 53, unknown 103933.8
2825 Male, age 18, unknown 70894.0
2407 Male, age 75, both hemispheres 52512.3
2316 Male, age 76, right hemisphere 45691.0
2224 Female, age 72, unknown 44567.1
2273 Male, age 74, both hemispheres 33264.3
Red nucleus
nTPM: 87487.6
2584 Male, age 75, left hemisphere 118027.8
2588 Male, age 74, left hemisphere 114586.8
2503 Female, age 72, unknown 97662.5
2785 Male, age 18, unknown 90506.2
1954 Female, age 42, unknown 90062.8
2823 Male, age 76, right hemisphere 82284.2
1821 Female, age 72, unknown 81282.2
1865 Male, age 51, unknown 80435.7
2227 Male, age 72, unknown 79655.2
2769 Male, age 72, unknown 78670.5
1904 Male, age 53, unknown 74383.6
2725 Female, age 75, unknown 62293.6
Substantia nigra
nTPM: 110698.4
2665 Male, age 74, both hemispheres 241942.3
1916 Female, age 42, unknown 122701.1
2699 Male, age 18, unknown 118143.2
2583 Male, age 75, right hemisphere 104899.8
1889 Female, age 72, unknown 100750.5
1941 Male, age 53, unknown 95609.9
1851 Male, age 51, unknown 92853.3
2241 Male, age 72, unknown 90816.4
2590 Female, age 75, unknown 78247.6
2409 Female, age 72, unknown 61019.7
Superior colliculus
nTPM: 82412.2
2664 Male, age 75, both hemispheres 132614.6
2087 Female, age 72, unknown 111385.5
2668 Female, age 75, unknown 81858.4
2587 Male, age 74, left hemisphere 81459.1
2261 Male, age 18, unknown 78394.1
1839 Male, age 51, unknown 71974.9
1913 Female, age 42, unknown 71722.1
1995 Male, age 72, unknown 67341.8
1796 Male, age 53, unknown 66505.9
1895 Male, age 76, right hemisphere 60865.6
Ventral tegmental area
nTPM: 81719.4
2218 Male, age 76, both hemispheres 113303.9
1942 Male, age 51, unknown 84800.5
2223 Female, age 72, unknown 81799.4
1915 Female, age 42, unknown 80155.9
2410 Female, age 72, unknown 67282.9
2021 Male, age 53, unknown 62973.6

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94670.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94670.0
Samples: 183

Max nTPM: 445593.4
Min nTPM: 4863.5
Std nTPM: 81731.1
Median nTPM: 68960.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 445593.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 435925.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 429037.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 295420.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 290981.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 282913.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 275375.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 275121.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 268264.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 263975.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 254769.0
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 250866.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 243445.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 237179.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 227217.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 222318.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 221465.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 217520.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 209266.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 209116.4
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 204295.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 201264.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 196759.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 195907.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 183967.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 173003.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 165874.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 165068.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 158441.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 156899.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 156467.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 156182.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 152731.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 150328.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 148597.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 147925.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 146467.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 146310.9
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 146235.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 145629.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 144467.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 141897.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 138357.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129608.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 125692.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 125652.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 122351.8
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 122049.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 120869.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 118891.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 118561.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 117774.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 115515.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 115258.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 105664.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 105043.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 104411.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 103889.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 102749.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 99120.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 98537.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 98249.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 97876.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 97745.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 97544.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 96054.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 95402.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 90747.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 89848.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 89690.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 88539.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 87284.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 86456.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 86017.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 83501.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 82859.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 82106.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 81991.4
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 81457.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 81442.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 80486.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 80170.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 79311.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 78590.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 78305.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 76906.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 75451.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 74968.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 72834.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 72058.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 68975.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 68960.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 68681.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 66264.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 64382.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 64274.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 64065.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 62747.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 62717.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 62206.9
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 61407.7
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 60722.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 60446.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 60129.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 59064.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 57162.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 56944.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 55851.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 54923.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 54310.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 51310.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 48696.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 48372.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 46925.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 45880.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 45723.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 45344.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45136.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 44611.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 44426.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44311.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 43368.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 43104.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 41660.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 41513.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 40721.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 40372.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 40099.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 39777.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 39342.3
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 38926.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 38820.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 38611.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 38175.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 37932.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 37893.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 37556.6
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 36660.5
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 36018.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 35402.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 35304.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34575.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 34111.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 34037.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 34025.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 33322.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 33271.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 33242.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 32940.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 32137.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 32097.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 32025.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 31710.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 30544.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 30035.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 29870.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 28760.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 28714.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 26701.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 26444.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 25743.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 24503.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24165.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 23736.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 23694.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 22059.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 21763.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 21563.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 21182.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 20457.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 19785.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 19554.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 17476.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 16667.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 15978.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 14837.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 14148.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 13702.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 12695.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 11828.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 9130.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 5865.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 4863.5
Show allShow less

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95675.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84206.9
Samples: 4

Max nTPM: 115352.0
Min nTPM: 52305.9
Sample A Female 115352.0
Sample B Female 76761.3
Sample C Male 92408.4
Sample D Male 52305.9
Midbrain
nTPM: 92763.4
Samples: 4

Max nTPM: 114937.5
Min nTPM: 64445.8
Sample A Female 64445.8
Sample B Female 114937.5
Sample C Male 109329.8
Sample D Male 82340.6
Periaqueductal gray
nTPM: 68683.4
Samples: 3

Max nTPM: 83546.0
Min nTPM: 52853.2
Sample B Female 83546.0
Sample C Male 69651.1
Sample D Male 52853.2
Superior colliculi
nTPM: 95675.1
Samples: 4

Max nTPM: 120238.2
Min nTPM: 63757.9
Sample A Female 104731.1
Sample B Female 63757.9
Sample C Male 120238.2
Sample D Male 93973.1

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30965.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 30965.9
Samples: 4

Max nTPM: 32684.9
Min nTPM: 29288.7
Sample A Male 32684.9
Sample B Male 31418.4
Sample C Female 30471.7
Sample D Female 29288.7

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.0
73927706 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 24.0
75043148 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 22.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo