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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
110698.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 94668.4
2586
Male, age 75, left hemisphere
170728.9
2828
Female, age 72, unknown
123902.9
2666
Male, age 74, left hemisphere
109389.1
2219
Male, age 76, both hemispheres
106318.7
1833
Male, age 53, unknown
84757.0
2019
Male, age 18, unknown
81382.8
1870
Female, age 42, unknown
76935.9
1827
Male, age 72, unknown
75573.5
1830
Male, age 51, unknown
72726.2
2411
Female, age 72, unknown
44969.3
Dorsal raphe nucleus nTPM: 68582.1
1828
Male, age 53, unknown
95516.2
2047
Male, age 72, unknown
73296.9
2750
Male, age 76, both hemispheres
68759.1
2016
Female, age 72, unknown
65085.3
2298
Female, age 72, unknown
40253.1
Inferior colliculus nTPM: 74316.3
2849
Male, age 72, unknown
86769.0
1890
Male, age 53, unknown
85100.2
1848
Female, age 42, unknown
75408.3
2097
Female, age 72, unknown
49987.5
Median raphe nucleus nTPM: 99562.5
2220
Male, age 76, midline
99562.5
Periaquaductal grey, anterior nTPM: 68970.8
2502
Female, age 75, unknown
82830.4
1795
Male, age 51, unknown
65077.9
1947
Male, age 18, unknown
59004.1
Periaquaductal grey, dorsal nTPM: 69861.9
2850
Male, age 76, both hemispheres
82571.8
1831
Male, age 72, unknown
70365.3
2464
Female, age 72, unknown
63745.3
1840
Male, age 53, unknown
62765.4
Periaquaductal grey, lateral nTPM: 48951.4
2053
Male, age 18, unknown
57686.9
2140
Male, age 76, both hemispheres
51517.4
2272
Male, age 74, both hemispheres
37649.9
Pretectal area nTPM: 87017.2
1817
Female, age 42, unknown
128864.4
1816
Male, age 51, unknown
127054.3
1944
Female, age 72, unknown
123725.0
2667
Female, age 75, unknown
115742.6
2007
Male, age 72, unknown
110940.1
1815
Male, age 53, unknown
103933.8
2825
Male, age 18, unknown
70894.0
2407
Male, age 75, both hemispheres
52512.3
2316
Male, age 76, right hemisphere
45691.0
2224
Female, age 72, unknown
44567.1
2273
Male, age 74, both hemispheres
33264.3
Red nucleus nTPM: 87487.6
2584
Male, age 75, left hemisphere
118027.8
2588
Male, age 74, left hemisphere
114586.8
2503
Female, age 72, unknown
97662.5
2785
Male, age 18, unknown
90506.2
1954
Female, age 42, unknown
90062.8
2823
Male, age 76, right hemisphere
82284.2
1821
Female, age 72, unknown
81282.2
1865
Male, age 51, unknown
80435.7
2227
Male, age 72, unknown
79655.2
2769
Male, age 72, unknown
78670.5
1904
Male, age 53, unknown
74383.6
2725
Female, age 75, unknown
62293.6
Substantia nigra nTPM: 110698.4
2665
Male, age 74, both hemispheres
241942.3
1916
Female, age 42, unknown
122701.1
2699
Male, age 18, unknown
118143.2
2583
Male, age 75, right hemisphere
104899.8
1889
Female, age 72, unknown
100750.5
1941
Male, age 53, unknown
95609.9
1851
Male, age 51, unknown
92853.3
2241
Male, age 72, unknown
90816.4
2590
Female, age 75, unknown
78247.6
2409
Female, age 72, unknown
61019.7
Superior colliculus nTPM: 82412.2
2664
Male, age 75, both hemispheres
132614.6
2087
Female, age 72, unknown
111385.5
2668
Female, age 75, unknown
81858.4
2587
Male, age 74, left hemisphere
81459.1
2261
Male, age 18, unknown
78394.1
1839
Male, age 51, unknown
71974.9
1913
Female, age 42, unknown
71722.1
1995
Male, age 72, unknown
67341.8
1796
Male, age 53, unknown
66505.9
1895
Male, age 76, right hemisphere
60865.6
Ventral tegmental area nTPM: 81719.4
2218
Male, age 76, both hemispheres
113303.9
1942
Male, age 51, unknown
84800.5
2223
Female, age 72, unknown
81799.4
1915
Female, age 42, unknown
80155.9
2410
Female, age 72, unknown
67282.9
2021
Male, age 53, unknown
62973.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94670.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 94670.0
Samples: 183
Max nTPM: 445593.4
Min nTPM: 4863.5
Std nTPM: 81731.1
Median nTPM: 68960.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
445593.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
435925.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
429037.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
295420.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
290981.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
282913.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
275375.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
275121.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
268264.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
263975.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
254769.0
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
250866.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
243445.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
237179.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
227217.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
222318.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
221465.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
217520.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
209266.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
209116.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
204295.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
201264.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
196759.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
195907.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
183967.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
173003.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
165874.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
165068.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
158441.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
156899.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
156467.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
156182.1
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
152731.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
150328.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
148597.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
147925.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
146467.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
146310.9
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
146235.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
145629.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
144467.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
141897.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
138357.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
129608.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
125692.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
125652.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
122351.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
122049.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
120869.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
118891.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
118561.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
117774.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
115515.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
115258.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
105664.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
105043.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
104411.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
103889.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
102749.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
99120.1
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
98537.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
98249.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
97876.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
97745.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
97544.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
96054.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
95402.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
90747.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
89848.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
89690.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
88539.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
87284.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
86456.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
86017.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
83501.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
82859.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
82106.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
81991.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
81457.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
81442.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
80486.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
80170.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
79311.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
78590.7
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
78305.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
76906.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
75451.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
74968.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
72834.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
72058.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
68975.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
68960.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
68681.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
66264.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
64382.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
64274.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
64065.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
62747.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
62717.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
62206.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
61407.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
60722.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
60446.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
60129.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
59064.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
57162.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
56944.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
55851.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
54923.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
54310.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
51310.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
48696.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
48372.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
46925.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
45880.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
45723.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
45344.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
45136.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
44611.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
44426.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
44311.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
43368.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
43104.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
41660.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
41513.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
40721.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
40372.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
40099.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
39777.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
39342.3
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
38926.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
38820.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
38611.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
38175.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
37932.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
37893.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
37556.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
36660.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
36018.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
35402.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
35304.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
34575.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
34111.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
34037.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
34025.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
33322.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
33271.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
33242.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
32940.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
32137.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
32097.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
32025.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
31710.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
30544.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
30035.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
29870.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
28760.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
28714.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
26701.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
26444.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
25743.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
24503.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
24165.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
23736.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
23694.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
22059.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
21763.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
21563.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
21182.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
20457.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
19785.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
19554.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
17476.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
16667.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
15978.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
14837.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
14148.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
13702.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
12695.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
11828.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
9130.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
5865.6
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
4863.5
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MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95675.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 84206.9
Samples: 4
Max nTPM: 115352.0
Min nTPM: 52305.9
Sample A
Female
115352.0
Sample B
Female
76761.3
Sample C
Male
92408.4
Sample D
Male
52305.9
Midbrain nTPM: 92763.4
Samples: 4
Max nTPM: 114937.5
Min nTPM: 64445.8
Sample A
Female
64445.8
Sample B
Female
114937.5
Sample C
Male
109329.8
Sample D
Male
82340.6
Periaqueductal gray nTPM: 68683.4
Samples: 3
Max nTPM: 83546.0
Min nTPM: 52853.2
Sample B
Female
83546.0
Sample C
Male
69651.1
Sample D
Male
52853.2
Superior colliculi nTPM: 95675.1
Samples: 4
Max nTPM: 120238.2
Min nTPM: 63757.9
Sample A
Female
104731.1
Sample B
Female
63757.9
Sample C
Male
120238.2
Sample D
Male
93973.1
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30965.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 30965.9
Samples: 4
Max nTPM: 32684.9
Min nTPM: 29288.7
Sample A
Male
32684.9
Sample B
Male
31418.4
Sample C
Female
30471.7
Sample D
Female
29288.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.