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  • TISSUE

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  • MT-CO1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:58094.5 nTPM
HPA Brain:79836.9 nTPM
GTEx:58094.5 nTPM
Pig:103102.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79836.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 45236.8
2565 Male, age 75, midline 71313.5
2194 Female, age 79, both hemispheres 53102.3
2816 Male, age 47, midline 41800.8
2048 Male, age 55, midline 38306.8
1981 Female, age 72, midline 21660.8
Cervical spinal cord, dorsal horn
nTPM: 34730.0
2297 Male, age 75, both hemispheres 67153.8
2721 Male, age 90, both hemispheres 51234.6
1877 Male, age 55, unknown 36235.2
2069 Male, age 47, both hemispheres 20463.1
2173 Female, age 72, unknown 20194.8
2296 Male, age 66, both hemispheres 13098.3
Cervical spinal cord, ventral horn
nTPM: 79836.9
2480 Male, age 75, both hemispheres 169681.6
2820 Female, age 79, both hemispheres 91775.3
2295 Male, age 66, both hemispheres 88870.9
2809 Male, age 90, both hemispheres 63623.7
2068 Male, age 55, unknown 53145.7
2098 Female, age 72, unknown 11924.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58094.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 58094.5
Samples: 204

Max nTPM: 473708.4
Min nTPM: 5223.9
Std nTPM: 70874.8
Median nTPM: 31988.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 473708.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 417840.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 389548.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 329544.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 322695.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 279666.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 268934.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 220020.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 196374.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 194587.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 190671.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 173531.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 157570.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 155225.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 152414.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 146320.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 138578.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 135766.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 133716.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 119319.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 111656.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 110829.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 110081.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 109765.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 109278.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 107082.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 106848.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 100436.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 100128.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 95453.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 94735.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 94163.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 94157.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 93549.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 91508.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 91169.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 90052.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 89488.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 88300.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 87587.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 83506.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 83074.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 82185.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 81454.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 81272.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 79883.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 78492.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 76211.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 74984.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 74709.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 73190.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 72883.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 72154.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 71198.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 70125.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 69906.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 69761.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 69154.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 69149.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 67578.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 67211.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 66246.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 65134.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 63600.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 61026.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 59894.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 59679.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 57756.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 57371.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 56973.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 56541.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 54543.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 54079.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 54049.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 53415.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 52507.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 50454.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 48411.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 48221.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 44980.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 44909.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 44528.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 44441.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 42194.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 41729.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 41715.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 41444.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 40577.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 40346.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 39322.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 39155.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 38802.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 38276.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 38264.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 37975.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 36467.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 36192.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 35748.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 35571.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 32138.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 32070.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 32028.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 31949.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 30816.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 30694.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 30602.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 30084.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 29816.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 29139.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 29046.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 28883.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 28808.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 27985.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 27558.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 27439.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 27028.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 25654.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 25484.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 25401.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 25371.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 24985.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 24980.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 24245.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 23859.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 23844.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 23751.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 23726.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 22704.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 22417.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 22137.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 21970.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 21861.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 21580.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 21545.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 21395.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 21332.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 21256.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 20681.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 20631.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 20564.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 20285.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 20112.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 19576.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 19469.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 19273.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 19045.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 18568.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 17694.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 17658.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 17202.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 16880.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 16418.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 16053.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 16036.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 15743.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 15642.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 15563.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 15316.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 15130.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 15041.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 15023.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 14985.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 14919.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 14669.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 14439.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 14356.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 14146.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 14005.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 13748.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 13608.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 13566.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 13323.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 13011.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 12609.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 12532.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 12502.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 12440.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 11969.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 11946.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 11731.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 11607.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 11373.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 11149.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 10741.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 10628.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 10456.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 10268.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 10220.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 10181.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 10123.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 9304.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 9197.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 8784.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 8133.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 7963.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 7954.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 7849.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 7521.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 7426.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 7426.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 7398.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 7116.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 6555.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5223.9
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SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103102.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 62072.8
Samples: 4

Max nTPM: 82201.1
Min nTPM: 46599.1
Sample A Female 82201.1
Sample B Female 59710.3
Sample C Male 46599.1
Sample D Male 59780.8
Ventral spinal cord
nTPM: 103102.0
Samples: 4

Max nTPM: 132460.2
Min nTPM: 75953.4
Sample A Female 132460.2
Sample B Female 96514.0
Sample C Male 107480.3
Sample D Male 75953.4

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