MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.8 nTPM
HPA Brain:30.0 nTPM
GTEx:69.8 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Pig:75.0 nTPM
Mouse:23.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.3
1870 Female, age 42, unknown 33.2
2411 Female, age 72, unknown 32.9
1833 Male, age 53, unknown 28.7
1830 Male, age 51, unknown 28.4
2019 Male, age 18, unknown 27.8
2828 Female, age 72, unknown 23.4
2666 Male, age 74, left hemisphere 19.5
1827 Male, age 72, unknown 19.4
2219 Male, age 76, both hemispheres 16.8
2586 Male, age 75, left hemisphere 13.3
Dorsal raphe nucleus
nTPM: 24.9
2750 Male, age 76, both hemispheres 32.9
2016 Female, age 72, unknown 27.3
2298 Female, age 72, unknown 26.4
1828 Male, age 53, unknown 21.3
2047 Male, age 72, unknown 16.6
Inferior colliculus
nTPM: 21.4
2097 Female, age 72, unknown 24.0
1890 Male, age 53, unknown 22.4
1848 Female, age 42, unknown 22.1
2849 Male, age 72, unknown 17.0
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Periaquaductal grey, anterior
nTPM: 18.2
2502 Female, age 75, unknown 20.5
1947 Male, age 18, unknown 19.5
1795 Male, age 51, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 20.4
2464 Female, age 72, unknown 25.1
1840 Male, age 53, unknown 19.1
2850 Male, age 76, both hemispheres 19.1
1831 Male, age 72, unknown 18.3
Periaquaductal grey, lateral
nTPM: 20.1
2140 Male, age 76, both hemispheres 20.6
2272 Male, age 74, both hemispheres 20.0
2053 Male, age 18, unknown 19.7
Pretectal area
nTPM: 21.8
2316 Male, age 76, right hemisphere 28.5
2273 Male, age 74, both hemispheres 26.5
2667 Female, age 75, unknown 26.3
1815 Male, age 53, unknown 24.9
2224 Female, age 72, unknown 24.7
1817 Female, age 42, unknown 22.5
2825 Male, age 18, unknown 19.7
2007 Male, age 72, unknown 19.1
1944 Female, age 72, unknown 17.8
2407 Male, age 75, both hemispheres 14.8
1816 Male, age 51, unknown 14.4
Red nucleus
nTPM: 30.0
1821 Female, age 72, unknown 43.4
1865 Male, age 51, unknown 36.4
1904 Male, age 53, unknown 35.8
1954 Female, age 42, unknown 35.3
2227 Male, age 72, unknown 33.7
2769 Male, age 72, unknown 32.9
2503 Female, age 72, unknown 32.1
2823 Male, age 76, right hemisphere 32.1
2785 Male, age 18, unknown 27.5
2725 Female, age 75, unknown 19.9
2588 Male, age 74, left hemisphere 16.5
2584 Male, age 75, left hemisphere 14.0
Substantia nigra
nTPM: 21.9
2409 Female, age 72, unknown 31.1
2241 Male, age 72, unknown 27.0
1851 Male, age 51, unknown 25.8
2699 Male, age 18, unknown 25.2
1889 Female, age 72, unknown 23.0
2590 Female, age 75, unknown 20.2
1941 Male, age 53, unknown 19.0
1916 Female, age 42, unknown 18.0
2583 Male, age 75, right hemisphere 17.0
2665 Male, age 74, both hemispheres 13.0
Superior colliculus
nTPM: 22.8
1913 Female, age 42, unknown 36.4
1995 Male, age 72, unknown 33.6
1895 Male, age 76, right hemisphere 26.4
2668 Female, age 75, unknown 23.2
1839 Male, age 51, unknown 22.9
2587 Male, age 74, left hemisphere 22.2
1796 Male, age 53, unknown 18.5
2087 Female, age 72, unknown 18.4
2261 Male, age 18, unknown 16.2
2664 Male, age 75, both hemispheres 10.0
Ventral tegmental area
nTPM: 24.5
2223 Female, age 72, unknown 31.7
2410 Female, age 72, unknown 30.3
1915 Female, age 42, unknown 22.5
1942 Male, age 51, unknown 21.8
2218 Male, age 76, both hemispheres 20.9
2021 Male, age 53, unknown 19.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 69.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.8
Samples: 183

Max nTPM: 164.8
Min nTPM: 28.6
Std nTPM: 23.7
Median nTPM: 65.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 164.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 158.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 147.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 143.3
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 132.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 129.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 125.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 122.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 117.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 116.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 114.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.3
FF:10158-103A5 76 years, female 97.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 75.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 72.5
Samples: 4

Max nTPM: 101.4
Min nTPM: 54.4
Sample A Female 75.7
Sample B Female 58.3
Sample C Male 54.4
Sample D Male 101.4
Midbrain
nTPM: 75.0
Samples: 4

Max nTPM: 136.3
Min nTPM: 43.9
Sample A Female 136.3
Sample B Female 73.4
Sample C Male 43.9
Sample D Male 46.5
Periaqueductal gray
nTPM: 65.1
Samples: 3

Max nTPM: 67.5
Min nTPM: 63.6
Sample B Female 64.2
Sample C Male 63.6
Sample D Male 67.5
Superior colliculi
nTPM: 64.5
Samples: 4

Max nTPM: 74.7
Min nTPM: 57.0
Sample A Female 74.7
Sample B Female 60.4
Sample C Male 57.0
Sample D Male 66.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 27.8
Min nTPM: 19.3
Sample A Male 27.8
Sample B Male 21.5
Sample C Female 19.3
Sample D Female 24.1

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