MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:216.6 nTPM
HPA Brain:115.5 nTPM
GTEx:216.6 nTPM
FANTOM5:48.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 115.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.2
1870 Female, age 42, unknown 131.5
2411 Female, age 72, unknown 117.3
1830 Male, age 51, unknown 110.7
1833 Male, age 53, unknown 110.0
2019 Male, age 18, unknown 109.0
2828 Female, age 72, unknown 97.1
1827 Male, age 72, unknown 96.3
2666 Male, age 74, left hemisphere 86.9
2586 Male, age 75, left hemisphere 80.7
2219 Male, age 76, both hemispheres 72.6
Dorsal raphe nucleus
nTPM: 111.0
2016 Female, age 72, unknown 127.4
2298 Female, age 72, unknown 114.7
2750 Male, age 76, both hemispheres 113.3
1828 Male, age 53, unknown 106.6
2047 Male, age 72, unknown 93.3
Inferior colliculus
nTPM: 104.3
2097 Female, age 72, unknown 109.1
1890 Male, age 53, unknown 105.0
1848 Female, age 42, unknown 103.2
2849 Male, age 72, unknown 99.8
Median raphe nucleus
nTPM: 105.3
2220 Male, age 76, midline 105.3
Periaquaductal grey, anterior
nTPM: 93.1
2502 Female, age 75, unknown 105.1
1795 Male, age 51, unknown 87.8
1947 Male, age 18, unknown 86.3
Periaquaductal grey, dorsal
nTPM: 115.3
2850 Male, age 76, both hemispheres 123.9
1840 Male, age 53, unknown 123.3
1831 Male, age 72, unknown 109.9
2464 Female, age 72, unknown 104.2
Periaquaductal grey, lateral
nTPM: 110.5
2140 Male, age 76, both hemispheres 124.4
2053 Male, age 18, unknown 112.1
2272 Male, age 74, both hemispheres 94.9
Pretectal area
nTPM: 99.7
2316 Male, age 76, right hemisphere 121.7
2273 Male, age 74, both hemispheres 111.7
2224 Female, age 72, unknown 109.8
1815 Male, age 53, unknown 105.3
2825 Male, age 18, unknown 102.9
2407 Male, age 75, both hemispheres 99.3
1817 Female, age 42, unknown 96.2
2667 Female, age 75, unknown 94.3
1816 Male, age 51, unknown 88.7
2007 Male, age 72, unknown 85.2
1944 Female, age 72, unknown 82.1
Red nucleus
nTPM: 115.5
1904 Male, age 53, unknown 128.2
1954 Female, age 42, unknown 127.1
1865 Male, age 51, unknown 126.2
1821 Female, age 72, unknown 125.7
2503 Female, age 72, unknown 124.8
2823 Male, age 76, right hemisphere 122.7
2769 Male, age 72, unknown 122.6
2227 Male, age 72, unknown 118.3
2785 Male, age 18, unknown 109.6
2725 Female, age 75, unknown 99.2
2588 Male, age 74, left hemisphere 94.9
2584 Male, age 75, left hemisphere 86.7
Substantia nigra
nTPM: 103.5
2409 Female, age 72, unknown 133.2
2241 Male, age 72, unknown 115.5
2590 Female, age 75, unknown 114.2
2699 Male, age 18, unknown 108.6
1851 Male, age 51, unknown 107.3
2665 Male, age 74, both hemispheres 101.4
1889 Female, age 72, unknown 98.0
2583 Male, age 75, right hemisphere 88.7
1916 Female, age 42, unknown 87.1
1941 Male, age 53, unknown 81.2
Superior colliculus
nTPM: 104.5
1995 Male, age 72, unknown 130.1
1913 Female, age 42, unknown 125.6
1895 Male, age 76, right hemisphere 104.4
2587 Male, age 74, left hemisphere 102.1
2664 Male, age 75, both hemispheres 101.6
2668 Female, age 75, unknown 99.7
1839 Male, age 51, unknown 97.9
2087 Female, age 72, unknown 96.3
2261 Male, age 18, unknown 94.8
1796 Male, age 53, unknown 92.0
Ventral tegmental area
nTPM: 104.9
2410 Female, age 72, unknown 112.9
2021 Male, age 53, unknown 109.2
2223 Female, age 72, unknown 105.9
1942 Male, age 51, unknown 102.4
1915 Female, age 42, unknown 101.3
2218 Male, age 76, both hemispheres 97.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 216.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 216.6
Samples: 183

Max nTPM: 465.0
Min nTPM: 73.7
Std nTPM: 76.7
Median nTPM: 207.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 465.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 462.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 426.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 414.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 398.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 398.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 381.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 380.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 361.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 353.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 347.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.9
FF:10158-103A5 76 years, female 48.9

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