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HMGN2
HPA
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  • TISSUE

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  • HMGN2
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:250.9 nTPM
HPA Brain:137.4 nTPM
GTEx:250.9 nTPM
FANTOM5:40.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 129.1
2048 Male, age 55, midline 156.8
1981 Female, age 72, midline 156.6
2816 Male, age 47, midline 122.1
2565 Male, age 75, midline 106.3
2194 Female, age 79, both hemispheres 103.5
Cervical spinal cord, dorsal horn
nTPM: 137.4
2173 Female, age 72, unknown 159.8
2296 Male, age 66, both hemispheres 157.1
2069 Male, age 47, both hemispheres 153.1
1877 Male, age 55, unknown 132.4
2297 Male, age 75, both hemispheres 119.1
2721 Male, age 90, both hemispheres 103.1
Cervical spinal cord, ventral horn
nTPM: 134.1
2098 Female, age 72, unknown 174.6
2480 Male, age 75, both hemispheres 149.7
2809 Male, age 90, both hemispheres 145.3
2295 Male, age 66, both hemispheres 127.4
2068 Male, age 55, unknown 112.2
2820 Female, age 79, both hemispheres 95.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 250.9
Samples: 204

Max nTPM: 438.0
Min nTPM: 97.9
Std nTPM: 57.4
Median nTPM: 248.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 438.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 412.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 397.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 392.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 382.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 378.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 361.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 360.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 360.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 355.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 347.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 343.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 342.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 340.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 339.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 339.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 338.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 336.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 336.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 336.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 328.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 326.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 326.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 325.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 324.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 323.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 323.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 319.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 317.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 311.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 310.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 310.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 309.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 304.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 300.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 300.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 298.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 298.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 296.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 294.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 293.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 292.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 291.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 290.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 290.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 289.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 287.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 284.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 284.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 283.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 283.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 282.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 282.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 282.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 281.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 278.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 278.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 278.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 277.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 276.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 275.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 274.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 273.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 272.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 271.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 270.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 270.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 269.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 269.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 268.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 268.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 268.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 266.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 261.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 261.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 261.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 261.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 261.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 260.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 259.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 259.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 258.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 257.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 257.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 257.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 256.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 256.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 255.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 255.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 255.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 254.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 254.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 253.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 253.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 252.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 252.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 250.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 249.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 249.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 249.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 249.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 249.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 247.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 247.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 247.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 246.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 244.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 244.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 243.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 241.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 240.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 239.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 238.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 238.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 236.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 236.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 235.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 235.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 235.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 234.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 233.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 233.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 233.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 233.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 232.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 232.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 231.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 231.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 231.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 229.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 228.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 228.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 227.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 227.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 226.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 226.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 226.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 225.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 225.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 224.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 224.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 223.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 223.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 223.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 223.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 221.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 221.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 221.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 220.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 220.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 220.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 219.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 216.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 215.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 212.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 212.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 212.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 210.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 209.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 208.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 207.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 206.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 205.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 205.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 204.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 199.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 199.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 199.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 199.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 198.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 197.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 196.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 193.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 193.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 192.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 192.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 191.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 188.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 186.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 186.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 186.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 184.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 183.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 180.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 179.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 178.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 177.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 177.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 175.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 174.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 169.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 168.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 164.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 163.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 162.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 153.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 150.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 150.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 148.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 135.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 129.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 128.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 123.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 97.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

40.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 40.5
FF:10181-103D1 60 years, female 46.6
FF:10159-103A6 76 years, female 34.4

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