BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58345.9 nTPM
HPA Brain:42273.4 nTPM
GTEx:58345.9 nTPM
Macaque:34070.0 nTPM
Mouse:378.6 nTPM
Rat:5470.0 nTPM
Pig:24383.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42273.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27583.1
2586 Male, age 75, left hemisphere 45038.0
2219 Male, age 76, both hemispheres 41583.0
2666 Male, age 74, left hemisphere 41444.7
2828 Female, age 72, unknown 29915.2
1870 Female, age 42, unknown 28471.4
1833 Male, age 53, unknown 25681.1
1830 Male, age 51, unknown 23167.8
1827 Male, age 72, unknown 16045.4
2019 Male, age 18, unknown 13315.2
2411 Female, age 72, unknown 11168.9
Dorsal raphe nucleus
nTPM: 14510.7
1828 Male, age 53, unknown 21153.5
2047 Male, age 72, unknown 17160.7
2750 Male, age 76, both hemispheres 15315.6
2016 Female, age 72, unknown 13616.0
2298 Female, age 72, unknown 5307.6
Inferior colliculus
nTPM: 25323.9
2849 Male, age 72, unknown 51592.3
1890 Male, age 53, unknown 23283.0
1848 Female, age 42, unknown 19192.5
2097 Female, age 72, unknown 7227.8
Median raphe nucleus
nTPM: 42273.4
2220 Male, age 76, midline 42273.4
Periaquaductal grey, anterior
nTPM: 14301.5
2502 Female, age 75, unknown 17614.5
1795 Male, age 51, unknown 13685.3
1947 Male, age 18, unknown 11604.7
Periaquaductal grey, dorsal
nTPM: 25083.5
2850 Male, age 76, both hemispheres 49284.6
1831 Male, age 72, unknown 18977.4
1840 Male, age 53, unknown 16132.0
2464 Female, age 72, unknown 15939.8
Periaquaductal grey, lateral
nTPM: 13025.6
2140 Male, age 76, both hemispheres 16976.3
2053 Male, age 18, unknown 15288.9
2272 Male, age 74, both hemispheres 6811.5
Pretectal area
nTPM: 21677.7
1944 Female, age 72, unknown 33958.6
2667 Female, age 75, unknown 32016.9
1816 Male, age 51, unknown 29110.7
1817 Female, age 42, unknown 28575.5
1815 Male, age 53, unknown 24593.9
2825 Male, age 18, unknown 24494.4
2007 Male, age 72, unknown 22569.9
2407 Male, age 75, both hemispheres 17474.7
2224 Female, age 72, unknown 11018.6
2316 Male, age 76, right hemisphere 8130.7
2273 Male, age 74, both hemispheres 6511.2
Red nucleus
nTPM: 25747.6
2503 Female, age 72, unknown 33867.8
2588 Male, age 74, left hemisphere 32422.0
1865 Male, age 51, unknown 30957.0
2584 Male, age 75, left hemisphere 30851.2
1954 Female, age 42, unknown 29560.8
2823 Male, age 76, right hemisphere 29483.5
2785 Male, age 18, unknown 24669.4
1904 Male, age 53, unknown 21901.6
2227 Male, age 72, unknown 20682.6
2769 Male, age 72, unknown 20134.3
2725 Female, age 75, unknown 19770.2
1821 Female, age 72, unknown 14670.5
Substantia nigra
nTPM: 25845.3
2699 Male, age 18, unknown 50698.2
2665 Male, age 74, both hemispheres 46406.0
1916 Female, age 42, unknown 32729.8
1941 Male, age 53, unknown 24137.0
1889 Female, age 72, unknown 22633.4
2241 Male, age 72, unknown 20891.9
2583 Male, age 75, right hemisphere 19842.7
1851 Male, age 51, unknown 14618.5
2590 Female, age 75, unknown 13446.4
2409 Female, age 72, unknown 13049.6
Superior colliculus
nTPM: 21072.3
2664 Male, age 75, both hemispheres 41961.2
2587 Male, age 74, left hemisphere 26671.9
1913 Female, age 42, unknown 21000.1
2087 Female, age 72, unknown 20870.9
2668 Female, age 75, unknown 20761.4
1895 Male, age 76, right hemisphere 19021.7
1839 Male, age 51, unknown 17248.4
1995 Male, age 72, unknown 15388.3
1796 Male, age 53, unknown 14819.1
2261 Male, age 18, unknown 12980.2
Ventral tegmental area
nTPM: 21315.3
2218 Male, age 76, both hemispheres 35632.1
2223 Female, age 72, unknown 25838.4
1942 Male, age 51, unknown 21398.7
1915 Female, age 42, unknown 18252.9
2021 Male, age 53, unknown 16446.7
2410 Female, age 72, unknown 10323.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58345.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58345.9
Samples: 183

Max nTPM: 182949.2
Min nTPM: 3558.5
Std nTPM: 37557.4
Median nTPM: 45944.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 182949.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 182901.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 178886.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 171105.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 169339.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 167594.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 158007.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 157875.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 151440.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 148177.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 145269.9
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MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 34070.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 34070.0
Samples: 1

Max nTPM: 34070.0
Min nTPM: 34070.0
Sample A 34070.0
Midbrain
nTPM: 22866.7
Samples: 1

Max nTPM: 22866.7
Min nTPM: 22866.7
Sample A 22866.7
Superior colliculi
nTPM: 16490.5
Samples: 1

Max nTPM: 16490.5
Min nTPM: 16490.5
Sample A 16490.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24383.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19213.8
Samples: 3

Max nTPM: 21440.9
Min nTPM: 15916.9
Sample A Female 20283.6
Sample B Female 15916.9
Sample C Male 21440.9
Midbrain
nTPM: 24383.5
Samples: 3

Max nTPM: 35340.3
Min nTPM: 13724.7
Sample B Female 35340.3
Sample C Male 24085.4
Sample D Male 13724.7
Periaqueductal gray
nTPM: 18088.6
Samples: 3

Max nTPM: 20254.3
Min nTPM: 14228.8
Sample B Female 19782.6
Sample C Male 20254.3
Sample D Male 14228.8
Superior colliculi
nTPM: 17957.4
Samples: 4

Max nTPM: 25105.3
Min nTPM: 2984.8
Sample A Female 22174.1
Sample B Female 2984.8
Sample C Male 25105.3
Sample D Male 21565.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 378.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 378.6
Samples: 4

Max nTPM: 469.8
Min nTPM: 305.3
Sample A 469.8
Sample B 305.3
Sample C 363.2
Sample D 376.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 5470.0
Rat sample Sample description nTPM
Midbrain
nTPM: 5470.0
Samples: 4

Max nTPM: 5715.8
Min nTPM: 5135.6
Sample A 5505.1
Sample A 5135.6
Sample A 5523.5
Sample A 5715.8

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