A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
15.7
nTPM
Schmiedel:
24.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
Classical monocyte nTPM: 0.7
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.2
P10809_1003
2.0
P10809_1020
0.2
P10809_1039
0.3
P10809_1058
0.5
P10809_1080
0.5
P10809_1107
0.8
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1004
0.3
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.6
P10809_1081
0.3
P10809_1108
0.2
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1005
0.3
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.1
P10809_1109
0.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
Monaco sample
nTPM
Classical monocyte nTPM: 15.7
Samples: 4
Max nTPM: 19.9
Min nTPM: 12.1
RHH5313_R3680
19.9
RHH5221_R3593
12.1
RHH5250_R3622
17.2
RHH5279_R3651
13.7
Intermediate monocyte nTPM: 7.6
Samples: 4
Max nTPM: 8.6
Min nTPM: 5.9
RHH5314_R3681
8.4
RHH5222_R3594
5.9
RHH5251_R3623
7.4
RHH5280_R3652
8.6
Non-classical monocyte nTPM: 2.8
Samples: 4
Max nTPM: 5.5
Min nTPM: 1.2
RHH5315_R3682
2.4
RHH5223_R3595
1.9
RHH5252_R3624
1.2
RHH5281_R3653
5.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.5
Schmiedel sample id
TPM
Classical monocyte TPM: 24.5
Samples: 91
Max TPM: 39.4
Min TPM: 10.3
MONOCYTES_1
39.4
MONOCYTES_2
38.6
MONOCYTES_3
37.6
MONOCYTES_4
36.1
MONOCYTES_5
36.0
MONOCYTES_6
34.0
MONOCYTES_7
33.4
MONOCYTES_8
33.2
MONOCYTES_9
32.8
MONOCYTES_10
32.7
MONOCYTES_11
32.1
MONOCYTES_12
31.5
MONOCYTES_13
31.3
MONOCYTES_14
31.2
MONOCYTES_15
30.5
MONOCYTES_16
30.1
MONOCYTES_17
30.1
MONOCYTES_18
30.0
MONOCYTES_19
29.9
MONOCYTES_20
29.7
MONOCYTES_21
29.2
MONOCYTES_22
28.7
MONOCYTES_23
28.0
MONOCYTES_24
27.8
MONOCYTES_25
27.7
MONOCYTES_26
27.6
MONOCYTES_27
27.4
MONOCYTES_28
27.3
MONOCYTES_29
27.3
MONOCYTES_30
26.8
MONOCYTES_31
26.8
MONOCYTES_32
26.8
MONOCYTES_33
26.7
MONOCYTES_34
26.1
MONOCYTES_35
26.1
MONOCYTES_36
26.1
MONOCYTES_37
26.0
MONOCYTES_38
26.0
MONOCYTES_39
25.6
MONOCYTES_40
25.6
MONOCYTES_41
25.3
MONOCYTES_42
25.2
MONOCYTES_43
25.2
MONOCYTES_44
25.0
MONOCYTES_45
24.9
MONOCYTES_46
24.9
MONOCYTES_47
24.7
MONOCYTES_48
24.4
MONOCYTES_49
24.0
MONOCYTES_50
23.8
MONOCYTES_51
23.8
MONOCYTES_52
23.8
MONOCYTES_53
23.7
MONOCYTES_54
23.7
MONOCYTES_55
23.3
MONOCYTES_56
23.3
MONOCYTES_57
23.1
MONOCYTES_58
22.8
MONOCYTES_59
22.7
MONOCYTES_60
22.7
MONOCYTES_61
22.7
MONOCYTES_62
22.6
MONOCYTES_63
21.8
MONOCYTES_64
21.2
MONOCYTES_65
21.2
MONOCYTES_66
21.1
MONOCYTES_67
21.0
MONOCYTES_68
20.7
MONOCYTES_69
20.6
MONOCYTES_70
20.5
MONOCYTES_71
19.9
MONOCYTES_72
19.7
MONOCYTES_73
18.5
MONOCYTES_74
18.5
MONOCYTES_75
18.3
MONOCYTES_76
18.0
MONOCYTES_77
17.5
MONOCYTES_78
17.5
MONOCYTES_79
17.3
MONOCYTES_80
17.0
MONOCYTES_81
16.6
MONOCYTES_82
16.5
MONOCYTES_83
16.4
MONOCYTES_84
15.4
MONOCYTES_85
14.5
MONOCYTES_86
13.9
MONOCYTES_87
13.7
MONOCYTES_88
13.7
MONOCYTES_89
12.6
MONOCYTES_90
11.9
MONOCYTES_91
10.3
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Non-classical monocyte TPM: 5.8
Samples: 90
Max TPM: 14.0
Min TPM: 1.1
M2_1
14.0
M2_2
10.4
M2_3
10.2
M2_4
9.9
M2_5
9.8
M2_6
9.4
M2_7
8.8
M2_8
8.7
M2_9
8.6
M2_10
8.5
M2_11
8.4
M2_12
8.4
M2_13
8.3
M2_14
8.3
M2_15
8.0
M2_16
7.9
M2_17
7.9
M2_18
7.9
M2_19
7.8
M2_20
7.8
M2_21
7.5
M2_22
7.4
M2_23
7.3
M2_24
7.2
M2_25
7.2
M2_26
7.1
M2_27
7.0
M2_28
7.0
M2_29
6.9
M2_30
6.9
M2_31
6.9
M2_32
6.9
M2_33
6.8
M2_34
6.7
M2_35
6.7
M2_36
6.6
M2_37
6.5
M2_38
6.5
M2_39
6.4
M2_40
6.4
M2_41
6.3
M2_42
6.2
M2_43
6.1
M2_44
5.7
M2_45
5.7
M2_46
5.4
M2_47
5.4
M2_48
5.4
M2_49
5.4
M2_50
5.4
M2_51
5.4
M2_52
5.3
M2_53
5.2
M2_54
5.2
M2_55
5.2
M2_56
5.1
M2_57
5.1
M2_58
5.0
M2_59
5.0
M2_60
5.0
M2_61
4.9
M2_62
4.8
M2_63
4.7
M2_64
4.6
M2_65
4.4
M2_66
4.4
M2_67
4.4
M2_68
4.3
M2_69
3.9
M2_70
3.9
M2_71
3.8
M2_72
3.7
M2_73
3.5
M2_74
3.4
M2_75
3.3
M2_76
3.3
M2_77
2.9
M2_78
2.9
M2_79
2.6
M2_80
2.6
M2_81
2.5
M2_82
2.5
M2_83
2.5
M2_84
2.5
M2_85
2.4
M2_86
2.3
M2_87
1.8
M2_88
1.8
M2_89
1.4
M2_90
1.1
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