A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.2
nTPM
Monaco:
8.5
nTPM
Schmiedel:
17.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.2
HPA sample
nTPM
Classical monocyte nTPM: 1.8
Samples: 6
Max nTPM: 2.6
Min nTPM: 1.2
P10809_1003
1.2
P10809_1020
2.0
P10809_1039
2.6
P10809_1058
1.7
P10809_1080
1.5
P10809_1107
1.8
Intermediate monocyte nTPM: 3.2
Samples: 6
Max nTPM: 5.1
Min nTPM: 1.5
P10809_1004
5.1
P10809_1023
1.5
P10809_1042
3.7
P10809_1061
3.1
P10809_1081
2.6
P10809_1108
3.4
Non-classical monocyte nTPM: 2.2
Samples: 5
Max nTPM: 2.8
Min nTPM: 1.6
P10809_1005
1.6
P10809_1053
2.0
P10809_1072
1.9
P10809_1082
2.8
P10809_1109
2.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.5
Monaco sample
nTPM
Classical monocyte nTPM: 5.1
Samples: 4
Max nTPM: 8.7
Min nTPM: 1.7
RHH5313_R3680
8.7
RHH5221_R3593
1.7
RHH5250_R3622
3.7
RHH5279_R3651
6.5
Intermediate monocyte nTPM: 8.3
Samples: 4
Max nTPM: 9.1
Min nTPM: 6.7
RHH5314_R3681
9.0
RHH5222_R3594
8.3
RHH5251_R3623
9.1
RHH5280_R3652
6.7
Non-classical monocyte nTPM: 8.5
Samples: 4
Max nTPM: 11.4
Min nTPM: 6.3
RHH5315_R3682
11.4
RHH5223_R3595
8.6
RHH5252_R3624
7.5
RHH5281_R3653
6.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.8
Schmiedel sample id
TPM
Classical monocyte TPM: 9.2
Samples: 91
Max TPM: 13.7
Min TPM: 5.4
MONOCYTES_1
13.7
MONOCYTES_2
12.5
MONOCYTES_3
12.3
MONOCYTES_4
12.3
MONOCYTES_5
12.1
MONOCYTES_6
12.0
MONOCYTES_7
11.7
MONOCYTES_8
11.6
MONOCYTES_9
11.6
MONOCYTES_10
11.6
MONOCYTES_11
11.0
MONOCYTES_12
11.0
MONOCYTES_13
11.0
MONOCYTES_14
11.0
MONOCYTES_15
10.9
MONOCYTES_16
10.9
MONOCYTES_17
10.6
MONOCYTES_18
10.6
MONOCYTES_19
10.5
MONOCYTES_20
10.5
MONOCYTES_21
10.5
MONOCYTES_22
10.4
MONOCYTES_23
10.2
MONOCYTES_24
10.1
MONOCYTES_25
10.0
MONOCYTES_26
10.0
MONOCYTES_27
9.9
MONOCYTES_28
9.9
MONOCYTES_29
9.9
MONOCYTES_30
9.8
MONOCYTES_31
9.7
MONOCYTES_32
9.7
MONOCYTES_33
9.6
MONOCYTES_34
9.6
MONOCYTES_35
9.6
MONOCYTES_36
9.6
MONOCYTES_37
9.5
MONOCYTES_38
9.4
MONOCYTES_39
9.4
MONOCYTES_40
9.3
MONOCYTES_41
9.3
MONOCYTES_42
9.2
MONOCYTES_43
9.2
MONOCYTES_44
9.2
MONOCYTES_45
9.2
MONOCYTES_46
9.2
MONOCYTES_47
9.2
MONOCYTES_48
9.1
MONOCYTES_49
9.1
MONOCYTES_50
9.0
MONOCYTES_51
9.0
MONOCYTES_52
8.9
MONOCYTES_53
8.9
MONOCYTES_54
8.9
MONOCYTES_55
8.8
MONOCYTES_56
8.8
MONOCYTES_57
8.7
MONOCYTES_58
8.6
MONOCYTES_59
8.6
MONOCYTES_60
8.5
MONOCYTES_61
8.5
MONOCYTES_62
8.3
MONOCYTES_63
8.3
MONOCYTES_64
8.2
MONOCYTES_65
8.2
MONOCYTES_66
8.2
MONOCYTES_67
8.2
MONOCYTES_68
8.1
MONOCYTES_69
8.1
MONOCYTES_70
8.0
MONOCYTES_71
7.9
MONOCYTES_72
7.8
MONOCYTES_73
7.8
MONOCYTES_74
7.8
MONOCYTES_75
7.7
MONOCYTES_76
7.7
MONOCYTES_77
7.6
MONOCYTES_78
7.6
MONOCYTES_79
7.5
MONOCYTES_80
7.4
MONOCYTES_81
7.3
MONOCYTES_82
7.1
MONOCYTES_83
7.1
MONOCYTES_84
7.0
MONOCYTES_85
7.0
MONOCYTES_86
6.7
MONOCYTES_87
6.4
MONOCYTES_88
6.4
MONOCYTES_89
6.0
MONOCYTES_90
5.7
MONOCYTES_91
5.4
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Non-classical monocyte TPM: 17.8
Samples: 90
Max TPM: 23.4
Min TPM: 12.4
M2_1
23.4
M2_2
22.7
M2_3
21.8
M2_4
21.3
M2_5
20.7
M2_6
20.6
M2_7
20.4
M2_8
20.2
M2_9
20.1
M2_10
20.1
M2_11
20.1
M2_12
20.0
M2_13
19.9
M2_14
19.9
M2_15
19.8
M2_16
19.7
M2_17
19.6
M2_18
19.6
M2_19
19.6
M2_20
19.4
M2_21
19.4
M2_22
19.3
M2_23
19.2
M2_24
19.2
M2_25
19.2
M2_26
19.1
M2_27
19.1
M2_28
19.0
M2_29
18.9
M2_30
18.9
M2_31
18.7
M2_32
18.6
M2_33
18.5
M2_34
18.3
M2_35
18.3
M2_36
18.3
M2_37
18.3
M2_38
18.2
M2_39
18.2
M2_40
18.2
M2_41
18.2
M2_42
18.1
M2_43
18.0
M2_44
18.0
M2_45
18.0
M2_46
17.9
M2_47
17.9
M2_48
17.8
M2_49
17.8
M2_50
17.7
M2_51
17.4
M2_52
17.3
M2_53
17.3
M2_54
17.3
M2_55
17.2
M2_56
17.2
M2_57
17.1
M2_58
17.1
M2_59
17.0
M2_60
17.0
M2_61
16.9
M2_62
16.9
M2_63
16.9
M2_64
16.8
M2_65
16.8
M2_66
16.8
M2_67
16.4
M2_68
16.2
M2_69
16.1
M2_70
16.0
M2_71
16.0
M2_72
16.0
M2_73
16.0
M2_74
15.9
M2_75
15.8
M2_76
15.7
M2_77
15.6
M2_78
15.4
M2_79
15.4
M2_80
15.4
M2_81
15.3
M2_82
15.2
M2_83
15.0
M2_84
14.9
M2_85
14.7
M2_86
14.5
M2_87
14.2
M2_88
14.1
M2_89
14.1
M2_90
12.4
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