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BETA
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  • MT-ND4
EVOLUTIONARY PONS Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PONS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:77603.5 nTPM
Macaque:9254.8 nTPM
Mouse:1005.4 nTPM
Rat:6023.0 nTPM
Pig:8807.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

PONS - HPA Brain Stereo-seq

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77603.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 54038.8
2301 Female, age 85, both hemispheres 109825.2
2188 Female, age 91, both hemispheres 40817.2
1984 Male, age 76, both hemispheres 36592.0
2090 Male, age 80, both hemispheres 28920.7
Dorsal cochlear nucleus
nTPM: 57002.1
2378 Male, age 80, both hemispheres 93066.0
2802 Male, age 74, right hemisphere 65877.8
2187 Female, age 91, both hemispheres 43793.5
2058 Male, age 76, both hemispheres 41855.9
2370 Male, age 61, both hemispheres 40417.3
Dorsal tegmental nucleus
nTPM: 50044.4
2358 Male, age 61, both hemispheres 86084.0
1936 Male, age 76, left hemisphere 40298.3
2083 Male, age 80, both hemispheres 38927.7
2326 Male, age 74, both hemispheres 34867.4
Dorsolateral tegmental area
nTPM: 33399.0
2141 Male, age 76, both hemispheres 52854.0
2337 Male, age 61, both hemispheres 44728.1
2654 Male, age 80, both hemispheres 33101.0
2751 Female, age 85, both hemispheres 19044.8
2360 Male, age 74, both hemispheres 17266.9
Kolliker-Fuse nucleus
nTPM: 47648.0
2793 Female, age 91, left hemisphere 80698.5
2163 Male, age 80, both hemispheres 45690.7
2315 Male, age 76, right hemisphere 16554.9
Lateral lemniscal nuclei
nTPM: 43717.5
2320 Female, age 91, left hemisphere 72432.1
2169 Male, age 76, both hemispheres 54369.1
2453 Male, age 74, right hemisphere 52331.0
2036 Male, age 80, both hemispheres 25792.2
2746 Female, age 85, left hemisphere 13663.2
Lateral parabrachial nucleus
nTPM: 30691.9
2792 Male, age 76, both hemispheres 41421.1
2790 Male, age 61, both hemispheres 39127.5
2139 Female, age 85, right hemisphere 24252.1
2013 Male, age 80, both hemispheres 17967.0
Lateral vestibular nucleus
nTPM: 77603.5
2184 Male, age 76, both hemispheres 88834.5
2311 Male, age 80, both hemispheres 66372.4
Locus coeruleus
nTPM: 42423.9
2720 Male, age 74, both hemispheres 76629.7
2162 Male, age 80, both hemispheres 57893.0
2788 Male, age 74, unknown 44583.3
2317 Female, age 72, unknown 36633.2
1980 Male, age 76, both hemispheres 29953.8
2014 Male, age 55, unknown 29487.7
2123 Female, age 91, both hemispheres 21786.5
Medial parabrachial nucleus
nTPM: 38689.3
2854 Male, age 80, both hemispheres 60397.2
2786 Male, age 76, both hemispheres 52179.7
2156 Male, age 61, both hemispheres 43145.5
2170 Female, age 91, both hemispheres 28950.3
2463 Female, age 85, right hemisphere 8773.7
Medial periolivary nuclei
nTPM: 39234.7
2458 Female, age 91, both hemispheres 76651.2
2171 Female, age 85, both hemispheres 49892.7
2063 Male, age 76, both hemispheres 25572.6
2081 Male, age 80, both hemispheres 23371.4
2791 Male, age 74, right hemisphere 20685.5
Motor facial nucleus
nTPM: 67037.6
2795 Female, age 91, both hemispheres 127037.3
2327 Male, age 80, both hemispheres 98628.9
2697 Female, age 85, both hemispheres 93391.6
2365 Male, age 74, right hemisphere 30503.5
2062 Male, age 76, both hemispheres 26586.9
2126 Male, age 61, both hemispheres 26077.3
Motor trigeminal nucleus
nTPM: 49608.3
2321 Female, age 91, both hemispheres 79715.3
2335 Male, age 61, both hemispheres 46100.6
2309 Male, age 76, both hemispheres 45262.1
2560 Male, age 74, both hemispheres 43226.7
2079 Male, age 80, both hemispheres 33736.7
Nuclei of the trapezoid body
nTPM: 41488.4
2368 Female, age 91, both hemispheres 75908.4
2166 Male, age 80, both hemispheres 49447.1
1983 Male, age 76, both hemispheres 31661.6
2159 Male, age 61, both hemispheres 26694.4
2735 Female, age 85, both hemispheres 23730.6
Nucleus raphe magnus
nTPM: 51448.0
2328 Male, age 80, both hemispheres 76278.6
2459 Female, age 91, both hemispheres 70235.2
2172 Female, age 85, both hemispheres 62176.6
2455 Male, age 74, both hemispheres 40844.8
2051 Male, age 76, both hemispheres 33905.8
2160 Male, age 61, both hemispheres 25247.2
Paramedian reticular nucleus
nTPM: 33930.7
2313 Male, age 61, both hemispheres 49600.2
2050 Female, age 85, both hemispheres 35032.2
2052 Male, age 76, both hemispheres 33322.4
2057 Male, age 80, both hemispheres 17767.9
Pedunculopontine tegmental nucleus
nTPM: 43724.7
2334 Male, age 80, both hemispheres 56075.9
2338 Male, age 61, both hemispheres 53013.1
1921 Female, age 85, both hemispheres 22085.0
Pontine nuclei
nTPM: 26945.4
2319 Female, age 91, both hemispheres 50595.3
2787 Female, age 85, both hemispheres 34066.0
2115 Male, age 80, left hemisphere 29064.5
2454 Male, age 74, left hemisphere 28210.3
1863 Male, age 55, unknown 25074.2
1968 Male, age 76, left hemisphere 22431.2
2109 Female, age 72, unknown 16328.2
2727 Male, age 61, right hemisphere 9793.8
Pontine raphe nucleus
nTPM: 39325.8
2853 Male, age 76, midline 49515.7
2122 Female, age 85, midline 29136.0
Posteroventral cochlear nucleus
nTPM: 33203.5
2341 Male, age 80, both hemispheres 51652.7
2371 Male, age 61, both hemispheres 44332.6
2752 Female, age 85, both hemispheres 26876.4
2135 Female, age 91, both hemispheres 22176.5
2070 Male, age 76, both hemispheres 20979.5
Principal sensory trigeminal nucleus
nTPM: 58145.9
2324 Male, age 76, both hemispheres 116603.0
2367 Female, age 91, left hemisphere 70990.8
2158 Male, age 61, both hemispheres 24934.9
2008 Male, age 80, left hemisphere 20055.1
Reticular pontine nucleus, caudal
nTPM: 55883.1
2332 Male, age 80, right hemisphere 90817.2
2457 Female, age 91, both hemispheres 74152.1
2559 Male, age 74, both hemispheres 29551.7
2092 Male, age 76, both hemispheres 29011.5
Reticular pontine nucleus, oral
nTPM: 39338.0
2366 Female, age 91, both hemispheres 82145.4
2167 Male, age 76, both hemispheres 49835.9
1939 Male, age 80, both hemispheres 24621.5
2361 Male, age 74, both hemispheres 21478.2
2012 Female, age 85, both hemispheres 18609.0
Reticulotegmental nucleus
nTPM: 77323.3
2322 Female, age 91, both hemispheres 91430.6
2333 Male, age 80, both hemispheres 89315.0
2325 Male, age 76, both hemispheres 72663.1
2452 Male, age 74, both hemispheres 55884.4
Spinal trigeminal nucleus, oral
nTPM: 47571.3
2164 Male, age 80, both hemispheres 84623.6
1978 Male, age 76, both hemispheres 34400.3
2737 Female, age 85, both hemispheres 23689.9
Subcoeruleus area
nTPM: 33170.9
2323 Female, age 91, left hemisphere 42513.1
2451 Male, age 74, both hemispheres 40599.0
1958 Male, age 80, both hemispheres 32551.6
2089 Male, age 76, left hemisphere 31693.5
2369 Female, age 85, left hemisphere 18497.2
Superior olive
nTPM: 45499.0
2561 Female, age 91, both hemispheres 88051.0
2329 Male, age 80, right hemisphere 80472.7
2020 Male, age 76, both hemispheres 22015.3
2364 Male, age 74, right hemisphere 18547.1
1875 Female, age 85, both hemispheres 18408.9
Ventral periolivary nuclei
nTPM: 46308.1
2794 Female, age 91, left hemisphere 76371.9
2165 Male, age 80, both hemispheres 56085.5
2130 Female, age 85, both hemispheres 37300.3
2023 Male, age 76, both hemispheres 15474.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 54937.0
2840 Female, age 85, both hemispheres 72089.0
2456 Female, age 91, both hemispheres 70232.0
2359 Male, age 61, both hemispheres 62759.8
2161 Male, age 80, both hemispheres 53958.3
2449 Male, age 74, both hemispheres 35990.8
1959 Male, age 76, both hemispheres 34592.4

PONS - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9254.8
Macaque sample Sample description nTPM
Pons
nTPM: 9254.9
Samples: 2

Max nTPM: 10061.1
Min nTPM: 8448.6
Sample A 8448.6
Sample B 10061.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8807.2
Pig sample Sample description nTPM
Pons
nTPM: 8807.1
Samples: 3

Max nTPM: 12318.8
Min nTPM: 6885.5
Sample A Female 12318.8
Sample B Female 6885.5
Sample C Male 7217.1

PONS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1005.4
Mouse sample Sample description nTPM
Pons
nTPM: 1005.4
Samples: 4

Max nTPM: 1140.7
Min nTPM: 894.1
Sample A 1140.7
Sample B 894.1
Sample C 993.0
Sample D 993.7

PONS - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6023.0
Rat sample Sample description nTPM
Pons
nTPM: 6023.0
Samples: 4

Max nTPM: 6711.1
Min nTPM: 4824.2
Sample A 6711.1
Sample A 6140.5
Sample A 4824.2
Sample A 6416.2

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