MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87133.4 nTPM
HPA Brain:52429.3 nTPM
GTEx:87133.4 nTPM
Pig:49449.4 nTPM
Mouse:28656.2 nTPM
Allen mouse:23.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52429.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38449.2
2586 Male, age 75, left hemisphere 70897.3
2666 Male, age 74, left hemisphere 52989.7
2219 Male, age 76, both hemispheres 48541.6
2828 Female, age 72, unknown 45635.6
1870 Female, age 42, unknown 34199.3
1833 Male, age 53, unknown 33094.5
1830 Male, age 51, unknown 28323.1
1827 Male, age 72, unknown 27677.0
2019 Male, age 18, unknown 26833.1
2411 Female, age 72, unknown 16301.0
Dorsal raphe nucleus
nTPM: 25132.0
1828 Male, age 53, unknown 34053.7
2047 Male, age 72, unknown 29663.3
2750 Male, age 76, both hemispheres 25887.7
2016 Female, age 72, unknown 23029.6
2298 Female, age 72, unknown 13025.6
Inferior colliculus
nTPM: 28514.0
2849 Male, age 72, unknown 39604.1
1890 Male, age 53, unknown 31370.3
1848 Female, age 42, unknown 26702.8
2097 Female, age 72, unknown 16379.0
Median raphe nucleus
nTPM: 52429.3
2220 Male, age 76, midline 52429.3
Periaquaductal grey, anterior
nTPM: 25064.9
2502 Female, age 75, unknown 29993.8
1795 Male, age 51, unknown 24418.5
1947 Male, age 18, unknown 20782.5
Periaquaductal grey, dorsal
nTPM: 30022.6
2850 Male, age 76, both hemispheres 45696.3
1831 Male, age 72, unknown 27149.8
1840 Male, age 53, unknown 24799.0
2464 Female, age 72, unknown 22445.3
Periaquaductal grey, lateral
nTPM: 19254.9
2140 Male, age 76, both hemispheres 22957.6
2053 Male, age 18, unknown 22017.2
2272 Male, age 74, both hemispheres 12789.9
Pretectal area
nTPM: 34067.1
2667 Female, age 75, unknown 51599.2
1816 Male, age 51, unknown 49568.5
1817 Female, age 42, unknown 48557.2
1944 Female, age 72, unknown 48184.6
2007 Male, age 72, unknown 41708.2
1815 Male, age 53, unknown 40146.6
2825 Male, age 18, unknown 27970.0
2407 Male, age 75, both hemispheres 22862.0
2224 Female, age 72, unknown 18321.7
2316 Male, age 76, right hemisphere 15087.4
2273 Male, age 74, both hemispheres 10732.7
Red nucleus
nTPM: 31436.5
2584 Male, age 75, left hemisphere 48012.0
2588 Male, age 74, left hemisphere 39030.7
2503 Female, age 72, unknown 34896.4
2785 Male, age 18, unknown 34602.8
1954 Female, age 42, unknown 32384.5
1865 Male, age 51, unknown 31012.6
2823 Male, age 76, right hemisphere 28400.6
2227 Male, age 72, unknown 26654.7
1904 Male, age 53, unknown 26643.3
1821 Female, age 72, unknown 26506.1
2769 Male, age 72, unknown 26483.6
2725 Female, age 75, unknown 22610.7
Substantia nigra
nTPM: 41731.9
2665 Male, age 74, both hemispheres 81441.9
1916 Female, age 42, unknown 56865.1
2699 Male, age 18, unknown 56714.4
1941 Male, age 53, unknown 37705.9
1889 Female, age 72, unknown 37636.6
2241 Male, age 72, unknown 36110.6
2583 Male, age 75, right hemisphere 35214.4
1851 Male, age 51, unknown 31440.7
2590 Female, age 75, unknown 25405.0
2409 Female, age 72, unknown 18784.8
Superior colliculus
nTPM: 31678.0
2664 Male, age 75, both hemispheres 58938.7
2087 Female, age 72, unknown 39944.1
2587 Male, age 74, left hemisphere 33817.1
2668 Female, age 75, unknown 30326.3
1913 Female, age 42, unknown 28461.1
2261 Male, age 18, unknown 26497.3
1839 Male, age 51, unknown 25759.8
1796 Male, age 53, unknown 25403.0
1895 Male, age 76, right hemisphere 23863.3
1995 Male, age 72, unknown 23769.6
Ventral tegmental area
nTPM: 32213.1
2218 Male, age 76, both hemispheres 49272.0
1942 Male, age 51, unknown 34340.6
2223 Female, age 72, unknown 33009.6
1915 Female, age 42, unknown 32985.5
2021 Male, age 53, unknown 24876.2
2410 Female, age 72, unknown 18794.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 87133.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87133.4
Samples: 183

Max nTPM: 336086.8
Min nTPM: 3885.1
Std nTPM: 59416.2
Median nTPM: 68521.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 336086.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 329741.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 291201.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 268545.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 254988.2
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 237690.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 234373.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 224901.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 212316.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 207873.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 204640.3
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49449.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41460.9
Samples: 4

Max nTPM: 47299.4
Min nTPM: 30343.1
Sample A Female 47299.4
Sample B Female 40925.8
Sample C Male 47275.4
Sample D Male 30343.1
Midbrain
nTPM: 49449.4
Samples: 4

Max nTPM: 65759.4
Min nTPM: 38717.3
Sample A Female 38920.6
Sample B Female 65759.4
Sample C Male 54400.4
Sample D Male 38717.3
Periaqueductal gray
nTPM: 39155.2
Samples: 3

Max nTPM: 46797.6
Min nTPM: 31455.4
Sample B Female 46797.6
Sample C Male 39212.5
Sample D Male 31455.4
Superior colliculi
nTPM: 41976.1
Samples: 4

Max nTPM: 55073.4
Min nTPM: 15086.7
Sample A Female 47175.4
Sample B Female 15086.7
Sample C Male 55073.4
Sample D Male 50568.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28656.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 28656.3
Samples: 4

Max nTPM: 29173.3
Min nTPM: 28246.0
Sample A Male 29173.3
Sample B Male 28246.0
Sample C Female 28673.9
Sample D Female 28531.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 23.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.9
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 24.3
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 23.5

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