We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MT-CO3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MT-CO3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:56248.4 nTPM
HPA Brain:27877.3 nTPM
GTEx:56248.4 nTPM
Pig:48026.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27877.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 17653.7
2565 Male, age 75, midline 28833.2
2194 Female, age 79, both hemispheres 20030.7
2816 Male, age 47, midline 15979.5
2048 Male, age 55, midline 15263.3
1981 Female, age 72, midline 8161.9
Cervical spinal cord, dorsal horn
nTPM: 13412.9
2721 Male, age 90, both hemispheres 23737.5
2297 Male, age 75, both hemispheres 22958.2
1877 Male, age 55, unknown 14120.7
2069 Male, age 47, both hemispheres 7762.7
2173 Female, age 72, unknown 7101.6
2296 Male, age 66, both hemispheres 4797.0
Cervical spinal cord, ventral horn
nTPM: 27877.3
2480 Male, age 75, both hemispheres 57183.7
2820 Female, age 79, both hemispheres 36871.3
2295 Male, age 66, both hemispheres 26178.1
2809 Male, age 90, both hemispheres 22395.8
2068 Male, age 55, unknown 20296.4
2098 Female, age 72, unknown 4338.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56248.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 56248.4
Samples: 204

Max nTPM: 358976.6
Min nTPM: 8412.6
Std nTPM: 57070.3
Median nTPM: 34954.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 358976.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 342801.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 308428.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 298054.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 249271.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 239260.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 199470.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 186907.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 183716.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 178261.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 174586.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 170137.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 161470.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 153966.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 140971.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 127895.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 114917.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 111445.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 110137.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 107364.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 100311.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 99134.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 98985.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 98263.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 98087.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 96651.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 95035.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 93966.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 92320.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 92037.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 88319.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 86451.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 85554.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 85502.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 85474.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 85381.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 85376.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 85336.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 82501.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 81952.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 80994.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 79607.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 78715.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 77894.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 77571.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 76146.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 75879.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75425.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 75313.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 73634.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 72338.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 72155.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 71739.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 69809.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 68315.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 65828.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 65355.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 64877.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 63005.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 62505.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 62318.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 61278.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 60694.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 59931.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 58909.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 57517.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 56896.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 56039.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 55813.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 55090.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 54201.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 53204.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 52576.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 52088.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 49255.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 48871.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 48326.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 47571.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 47544.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 46348.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 46339.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 46170.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 45239.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 44950.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 44358.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 44077.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 43656.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 43289.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 43131.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 42857.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 42830.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 42590.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 42499.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 42480.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 42154.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 41191.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 38324.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 37042.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 36531.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 35768.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 35523.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 35006.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 34901.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 34654.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 34560.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 34559.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 33963.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 33216.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 33134.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 33022.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 32815.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 32404.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 32185.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 32143.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 31889.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 31602.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 31143.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 30705.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 30705.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 30601.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 30280.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 29851.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 29274.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 29185.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 29110.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 28672.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 28414.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 27773.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 27756.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 27377.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 26989.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 26636.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 26496.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 26404.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 26320.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 25518.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 25384.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 25047.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 25024.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 24832.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 24689.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 24540.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 24503.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 24125.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 23886.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 23877.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 23662.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 23600.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 23536.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 23508.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 22910.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 22693.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 22455.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 22384.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 22211.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 22177.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 22038.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 21454.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 20900.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 20665.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 20371.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 20161.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 19806.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 19408.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 19238.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 19203.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 19197.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 19036.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 18901.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 18644.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 18384.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 18068.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 18051.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 18034.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 17992.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 17821.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 17782.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 17752.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 17654.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 17407.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 17223.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 17204.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 17155.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 16825.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 16442.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 16355.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 15523.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 15513.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 15226.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 14862.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 14281.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 13759.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 13448.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 13435.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 13222.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 12272.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 11787.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 11202.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 10859.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 10410.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 10287.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 10277.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 9101.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 8412.6
Show allShow less

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48026.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 35469.6
Samples: 4

Max nTPM: 39648.4
Min nTPM: 26611.8
Sample A Female 38379.3
Sample B Female 39648.4
Sample C Male 26611.8
Sample D Male 37238.9
Ventral spinal cord
nTPM: 48026.6
Samples: 4

Max nTPM: 63397.3
Min nTPM: 38165.4
Sample A Female 63397.3
Sample B Female 38165.4
Sample C Male 47025.6
Sample D Male 43518.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo