A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.6
nTPM
Monaco:
7.2
nTPM
Schmiedel:
14.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
HPA sample
nTPM
NK-cell nTPM: 2.6
Samples: 6
Max nTPM: 12.2
Min nTPM: 0.0
P10809_1013
2.4
P10809_1033
0.5
P10809_1052
0.6
P10809_1071
0.0
P10809_1093
12.2
P10809_1103
0.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.2
Monaco sample
nTPM
NK-cell nTPM: 7.2
Samples: 4
Max nTPM: 9.2
Min nTPM: 4.7
RHH5316_R3683
9.0
RHH5224_R3596
4.7
RHH5253_R3625
9.2
RHH5282_R3654
5.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.2
Schmiedel sample id
TPM
NK-cell TPM: 14.2
Samples: 90
Max TPM: 20.9
Min TPM: 8.2
NK_1
20.9
NK_2
20.4
NK_3
20.2
NK_4
20.1
NK_5
19.9
NK_6
19.6
NK_7
18.9
NK_8
18.7
NK_9
18.3
NK_10
18.2
NK_11
18.2
NK_12
18.0
NK_13
17.8
NK_14
17.4
NK_15
17.4
NK_16
17.3
NK_17
17.3
NK_18
17.1
NK_19
16.9
NK_20
16.7
NK_21
16.6
NK_22
16.5
NK_23
16.2
NK_24
16.0
NK_25
15.9
NK_26
15.8
NK_27
15.7
NK_28
15.6
NK_29
15.6
NK_30
15.5
NK_31
15.4
NK_32
15.3
NK_33
15.2
NK_34
14.9
NK_35
14.8
NK_36
14.8
NK_37
14.6
NK_38
14.4
NK_39
14.2
NK_40
14.1
NK_41
14.1
NK_42
14.0
NK_43
14.0
NK_44
13.8
NK_45
13.6
NK_46
13.6
NK_47
13.6
NK_48
13.6
NK_49
13.5
NK_50
13.3
NK_51
13.2
NK_52
13.1
NK_53
13.1
NK_54
13.0
NK_55
12.9
NK_56
12.9
NK_57
12.9
NK_58
12.8
NK_59
12.7
NK_60
12.7
NK_61
12.6
NK_62
12.6
NK_63
12.5
NK_64
12.3
NK_65
12.3
NK_66
12.2
NK_67
12.0
NK_68
12.0
NK_69
11.8
NK_70
11.8
NK_71
11.7
NK_72
11.6
NK_73
11.6
NK_74
11.5
NK_75
11.4
NK_76
11.3
NK_77
11.2
NK_78
11.1
NK_79
11.1
NK_80
10.6
NK_81
10.5
NK_82
10.3
NK_83
10.2
NK_84
10.1
NK_85
9.9
NK_86
9.6
NK_87
9.5
NK_88
9.1
NK_89
8.5
NK_90
8.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
