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  • PFDN6
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:120.0 nTPM
HPA Brain:7.9 nTPM
GTEx:120.0 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:46.3 nTPM
Mouse:118.8 nTPM
Allen mouse:2.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.9
Sample id Sample description nTPM
Amygdala
nTPM: 7.9
2814 Male, age 76, right hemisphere 9.2
1987 Female, age 91, left hemisphere 8.5
2517 Female, age 94, left hemisphere 8.1
2514 Male, age 75, right hemisphere 7.0
2695 Female, age 67, right hemisphere 6.9
Basal amygdala
nTPM: 7.1
1955 Male, age 76, both hemispheres 8.4
2243 Female, age 91, right hemisphere 8.4
2110 Male, age 80, left hemisphere 8.3
2609 Male, age 75, right hemisphere 6.3
2685 Female, age 94, left hemisphere 6.1
2827 Female, age 67, right hemisphere 4.9
Central amygdala
nTPM: 7.0
2701 Female, age 91, right hemisphere 8.0
2239 Male, age 80, left hemisphere 7.8
1905 Male, age 76, both hemispheres 7.2
2515 Male, age 75, right hemisphere 6.5
2826 Female, age 94, left hemisphere 5.3
Corticomedial amygdala
nTPM: 7.8
2242 Female, age 91, right hemisphere 9.6
2829 Male, age 80, left hemisphere 9.4
2429 Female, age 94, left hemisphere 8.0
2428 Male, age 75, right hemisphere 7.0
2240 Male, age 76, both hemispheres 6.5
2535 Female, age 67, right hemisphere 6.3
Lateral amygdala
nTPM: 7.3
1883 Male, age 76, both hemispheres 10.2
2534 Female, age 94, left hemisphere 8.5
2256 Male, age 80, left hemisphere 7.8
2516 Male, age 75, right hemisphere 6.3
2255 Female, age 91, right hemisphere 5.9
2830 Female, age 67, right hemisphere 5.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 120.0
Samples: 181

Max nTPM: 280.2
Min nTPM: 56.0
Std nTPM: 38.0
Median nTPM: 114.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 280.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 261.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 253.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 251.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 223.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 209.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 204.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 187.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 181.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 170.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 170.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 169.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 169.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 168.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 167.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 167.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 166.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 165.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 163.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 161.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 161.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 161.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 161.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 159.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 157.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 157.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 156.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 154.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 153.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 152.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 151.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 151.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 150.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 150.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 150.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 150.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 148.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 147.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 146.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 143.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 142.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 142.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 142.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 142.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 139.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 138.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 137.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 137.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 137.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 136.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 136.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 136.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 132.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 132.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 131.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 131.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 130.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 129.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 129.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 128.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 128.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 128.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 127.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 127.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 126.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 126.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 125.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 125.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 124.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 124.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 123.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 122.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 120.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 119.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 119.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 119.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 119.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 118.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 115.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 115.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 115.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 115.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 115.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 114.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 114.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 114.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 112.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 112.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 111.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 111.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 111.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 110.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 110.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 110.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 109.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 108.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 108.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 108.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 108.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 107.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 107.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 106.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 106.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 105.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 104.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 103.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 103.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 102.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 102.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 102.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 100.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 100.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 99.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 98.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 97.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 97.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 96.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 96.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 96.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 96.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 95.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 94.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 94.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 93.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 93.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 93.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 92.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 92.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 92.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 92.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 91.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 91.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 90.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 90.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 90.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 90.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 88.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 86.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 86.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 86.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 85.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 84.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 83.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 82.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 82.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 82.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 81.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 81.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 81.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 78.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 77.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 76.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 75.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 75.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 75.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 72.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 71.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 70.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 70.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 68.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 66.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 66.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 65.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 58.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 57.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 56.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 21.4
FF:10151-102I7 76 years, female 21.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.3
Pig sample Sample description nTPM
Amygdala
nTPM: 46.4
Samples: 4

Max nTPM: 60.6
Min nTPM: 35.6
Sample A Female 60.6
Sample B Female 47.4
Sample C Male 41.8
Sample D Male 35.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 118.8
Samples: 4

Max nTPM: 130.4
Min nTPM: 108.5
Sample A Male 114.0
Sample B Male 122.2
Sample C Female 130.4
Sample D Female 108.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.1
68196924 Antisense, RP_041116_01_E12, Mouse strain C57BL/6J (56 days, male) 2.1

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