We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
AGPAT1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • AGPAT1
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
GLYCEROLIPID METABOLISM GLYCEROPHOSPHOLIPID METABOLISM
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

AGPAT1
Synonyms LPAAT-alpha, LPLAT1
Gene descriptioni

Full gene name according to HGNC.

1-acylglycerol-3-phosphate O-acyltransferase 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Neurons - Neurotransmission & signaling (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Astrocytes, Bergmann glia, Brain excitatory neurons, Brain inhibitory neurons, Ependymal cells, Late spermatids, Loop of henle epithelial cells, Microglia, Oligodendrocyte progenitor cells, Oligodendrocytes, Other brain neurons, Papillary tip epithelial cells, Platelets, Podocytes, Renal collecting duct principal cells)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Basic cellular processes (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Endoplasmic reticulum In addition localized to the Rods & Rings
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband p21.32
Chromosome location (bp) 32168212 - 32178096
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000204310 (version 109)
Entrez gene 10554
HGNC HGNC:324
UniProt Q99943
GeneCards AGPAT1
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Basic cellular processes

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
Show surface:
Off
On
Autorotate:
Off
On
PAE plot
Number of interactions: 2
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CKAP492651225
RHOA2121121916
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 2 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
MEOX241581000
RNASEH2A21472
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 2
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CKAP492651225
RHOA2121121916
AGPAT1 has no defined protein interactions in OpenCell.
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 145
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
A2M0519011
A2ML1000132
ACP700009
AKR1B1013117
ALB0111015
ALDH3A1122022
ALOX12B010030
ALPG000013
ANXA80150018
APCS03204
APOA161018013
APOA2215604
APOBEC3A01003
APOH05103
ARHGDIB03105
C1orf54000037
C1QC03004
C31115322
C3orf522572043
C4BPA00203
C5117103
C8G02001
C903102
CALML3246342
CALML5112030
CBR1133017
CD16006002
CFB00005
CFHR106001
CFI01203
CKAP492651225
CLEC4E5350043
CLIC3122208
CP000011
CRYAB91829018
CST11000041
CTSG040030
DSG3001012
EFNA2010032
EHD15519017
ENPP7040010
EPS8L113409
EVPL003118
F201304
FGB114018
FIBIN000036
GGH2141106
GM2A020019
GPX300102
GSDMA021123
GSTM535316
H1-57645313
H2AC1131310034
H2AC130137034
H2AC150130034
H2AC160130034
H2AC170131034
H2AX2230128039
H3-7002027
HAL011033
HAVCR203004
HEPHL1000017
HK306006
HMOX10253017
HP132016
HPX010012
HRG13205
IDH2006018
IDS010060
IGHA1000029
IGHA2000017
IGHG1010035
IGHG2000028
IGHG4000119
IGLL5001134
IL36A01004
IL36RN1121012
ISLR000065
ITGAM034102
ITIH100004
ITIH2002011
IVL020031
KLK100000115
KLK15020082
KLK601000012
KYNU00101
LCP1114014
LDLRAD12332048
LGALS7061027
LGALS7B161027
LRG102005
LTF002117
LY6H010020
LY861220114
MFAP4010073
MNDA111226
NAGA000222
NAGK193018
NAPA325434138
NCCRP1011028
NIBAN211908
ORM1121018
OXSR13413533
PLG02707
PPL3318023
PRSS2700001
PRTN3001040
PSCA000011
RAB1484263510
RAB38090015
RAB5B451108
RAMP30700100
RAP1B073027
RDH1201107
RHOA2121121916
RNASE7010015
RPS4Y1103027
S100A21134021
S100A7227719
S100A7A010026
S100A82311012
S100A94816016
S100P315707
SBDS159620
SDR9C7000022
SERPINA3161026
SERPINB2005024
SERPINB3114132
SERPINB4234036
SERPINB7000023
SERPIND101003
SERPINF105104
SERPINF200202
SERPING103006
SFTPC42650103
STOM512014221
TF0194024
TGM10241035
TGM3114026
TIGAR04106
TMEM87A005266
TTR8571007
TYMP020022
VIM36881091425
VTN210504
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene AGPAT1 is associated with 8 reactions in 2 different subsystems, and present in the compartments: Cytosol, Mitochondria. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Glycerophospholipid metabolism Cytosol, Nucleus, Extracellular, Peroxisome, Mitochondria, Endoplasmic reticulum, Golgi apparatus 106 96 7
Glycerolipid metabolism Cytosol, Lysosome, Endoplasmic reticulum, Extracellular, Mitochondria 65 154 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
AGPAT1-201 Q99943
A0A024RCV5
Enzymes
Metabolic proteins
Predicted membrane proteins
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
283 aa
31.7 kDa
No 2
AGPAT1-202 Q99943
A0A024RCV5
Enzymes
Metabolic proteins
Predicted membrane proteins
Mapped to neXtProt
Protein evidence (Ezkurdia et al 2014)
Show all
283 aa
31.7 kDa
No 2
AGPAT1-203 Q99943
A0A024RCV5
Enzymes
Metabolic proteins
Predicted membrane proteins
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
283 aa
31.7 kDa
No 2
AGPAT1-204 Q99943
A0A024RCV5
Enzymes
Metabolic proteins
Predicted membrane proteins
Mapped to neXtProt
Protein evidence (Ezkurdia et al 2014)
Show all
283 aa
31.7 kDa
No 2
AGPAT1-205 Q99943
A0A024RCV5
Enzymes
Metabolic proteins
Predicted membrane proteins
Mapped to neXtProt
Protein evidence (Ezkurdia et al 2014)
Show all
283 aa
31.7 kDa
No 2
AGPAT1-206 Q99943
A0A024RCV5
Enzymes
Metabolic proteins
Predicted membrane proteins
Mapped to neXtProt
Protein evidence (Ezkurdia et al 2014)
Show all
283 aa
31.7 kDa
No 2
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo