MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:182.2 nTPM
HPA Brain:3.8 nTPM
GTEx:182.2 nTPM
FANTOM5:167.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 3.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.9
2828 Female, age 72, unknown 2.9
1870 Female, age 42, unknown 2.5
1827 Male, age 72, unknown 2.3
2411 Female, age 72, unknown 2.2
1830 Male, age 51, unknown 2.1
2666 Male, age 74, left hemisphere 2.1
2019 Male, age 18, unknown 1.9
1833 Male, age 53, unknown 1.5
2219 Male, age 76, both hemispheres 1.1
2586 Male, age 75, left hemisphere 1.0
Dorsal raphe nucleus
nTPM: 2.6
2298 Female, age 72, unknown 3.8
2750 Male, age 76, both hemispheres 2.7
2016 Female, age 72, unknown 2.5
2047 Male, age 72, unknown 2.1
1828 Male, age 53, unknown 1.8
Inferior colliculus
nTPM: 2.0
2097 Female, age 72, unknown 2.6
1848 Female, age 42, unknown 2.0
2849 Male, age 72, unknown 2.0
1890 Male, age 53, unknown 1.5
Median raphe nucleus
nTPM: 2.8
2220 Male, age 76, midline 2.8
Periaquaductal grey, anterior
nTPM: 2.2
1795 Male, age 51, unknown 2.3
1947 Male, age 18, unknown 2.2
2502 Female, age 75, unknown 2.1
Periaquaductal grey, dorsal
nTPM: 2.2
2850 Male, age 76, both hemispheres 2.7
1831 Male, age 72, unknown 2.1
2464 Female, age 72, unknown 2.1
1840 Male, age 53, unknown 1.8
Periaquaductal grey, lateral
nTPM: 2.3
2053 Male, age 18, unknown 2.3
2140 Male, age 76, both hemispheres 2.3
2272 Male, age 74, both hemispheres 2.1
Pretectal area
nTPM: 1.9
2273 Male, age 74, both hemispheres 2.8
1817 Female, age 42, unknown 2.5
2224 Female, age 72, unknown 2.4
2007 Male, age 72, unknown 2.3
1944 Female, age 72, unknown 2.2
2667 Female, age 75, unknown 2.1
2825 Male, age 18, unknown 1.9
2407 Male, age 75, both hemispheres 1.7
1815 Male, age 53, unknown 1.5
1816 Male, age 51, unknown 1.5
2316 Male, age 76, right hemisphere 0.5
Red nucleus
nTPM: 2.4
2503 Female, age 72, unknown 3.5
1954 Female, age 42, unknown 3.4
1865 Male, age 51, unknown 2.8
2584 Male, age 75, left hemisphere 2.4
2769 Male, age 72, unknown 2.3
2785 Male, age 18, unknown 2.2
2588 Male, age 74, left hemisphere 2.1
2725 Female, age 75, unknown 2.1
2823 Male, age 76, right hemisphere 2.1
1821 Female, age 72, unknown 2.0
2227 Male, age 72, unknown 1.9
1904 Male, age 53, unknown 1.5
Substantia nigra
nTPM: 2.3
1851 Male, age 51, unknown 2.8
1889 Female, age 72, unknown 2.7
2409 Female, age 72, unknown 2.6
2699 Male, age 18, unknown 2.6
1916 Female, age 42, unknown 2.3
2583 Male, age 75, right hemisphere 2.1
2590 Female, age 75, unknown 2.1
2665 Male, age 74, both hemispheres 2.1
1941 Male, age 53, unknown 2.0
2241 Male, age 72, unknown 1.9
Superior colliculus
nTPM: 2.1
1796 Male, age 53, unknown 2.8
2087 Female, age 72, unknown 2.7
1995 Male, age 72, unknown 2.6
1913 Female, age 42, unknown 2.5
2587 Male, age 74, left hemisphere 2.1
2668 Female, age 75, unknown 2.1
2261 Male, age 18, unknown 1.9
1839 Male, age 51, unknown 1.7
1895 Male, age 76, right hemisphere 1.5
2664 Male, age 75, both hemispheres 0.8
Ventral tegmental area
nTPM: 3.8
2021 Male, age 53, unknown 10.4
2410 Female, age 72, unknown 2.7
1915 Female, age 42, unknown 2.6
1942 Male, age 51, unknown 2.6
2218 Male, age 76, both hemispheres 2.2
2223 Female, age 72, unknown 2.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 182.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 182.2
Samples: 183

Max nTPM: 1226.6
Min nTPM: 47.5
Std nTPM: 110.3
Median nTPM: 167.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1226.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 516.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 407.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 381.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 372.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 370.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 370.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 365.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 349.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 349.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 345.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 167.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.8
FF:10158-103A5 76 years, female 167.8

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