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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:181.1 nTPM
HPA Brain:4.2 nTPM
GTEx:181.1 nTPM
FANTOM5:100.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2.8
1981 Female, age 72, midline 4.3
2565 Male, age 75, midline 3.9
2816 Male, age 47, midline 2.8
2048 Male, age 55, midline 2.3
2194 Female, age 79, both hemispheres 0.5
Cervical spinal cord, dorsal horn
nTPM: 4.2
2297 Male, age 75, both hemispheres 7.5
2721 Male, age 90, both hemispheres 5.5
2069 Male, age 47, both hemispheres 3.5
2173 Female, age 72, unknown 3.3
2296 Male, age 66, both hemispheres 3.2
1877 Male, age 55, unknown 2.3
Cervical spinal cord, ventral horn
nTPM: 3.9
2098 Female, age 72, unknown 7.2
2809 Male, age 90, both hemispheres 6.5
2295 Male, age 66, both hemispheres 3.4
2480 Male, age 75, both hemispheres 2.8
2068 Male, age 55, unknown 2.7
2820 Female, age 79, both hemispheres 0.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 181.1
Samples: 204

Max nTPM: 1218.0
Min nTPM: 44.3
Std nTPM: 116.1
Median nTPM: 162.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1218.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 540.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 508.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 441.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 429.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 413.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 413.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 405.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 385.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 367.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 364.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 352.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 335.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 325.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 323.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 319.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 318.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 318.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 317.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 311.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 304.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 303.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 301.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 301.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 297.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 295.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 292.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 291.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 277.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 272.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 270.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 265.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 262.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 262.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 260.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 257.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 252.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 250.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 240.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 232.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 231.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 230.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 230.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 227.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 226.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 225.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 225.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 218.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 217.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 216.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 216.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 213.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 211.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 211.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 210.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 207.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 206.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 206.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 204.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 203.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 202.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 200.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 199.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 198.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 196.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 196.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 196.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 195.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 195.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 194.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 192.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 190.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 189.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 188.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 186.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 185.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 185.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 181.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 180.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 180.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 179.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 179.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 178.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 177.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 176.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 173.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 171.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 171.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 171.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 170.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 169.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 169.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 169.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 169.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 168.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 167.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 166.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 166.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 165.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 165.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 164.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 163.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 161.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 160.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 159.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 157.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 156.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 154.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 153.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 152.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 152.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 152.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 152.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 152.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 152.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 151.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 150.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 149.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 145.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 144.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 142.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 142.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 142.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 142.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 141.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 141.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 140.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 138.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 135.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 135.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 134.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 132.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 131.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 130.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 130.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 129.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 128.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 125.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 123.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 122.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 122.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 121.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 118.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 118.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 117.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 117.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 117.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 116.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 115.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 113.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 111.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 110.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 109.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 107.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 106.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 106.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 105.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 103.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 103.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 103.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 102.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 102.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 101.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 101.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 100.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 98.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 97.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 97.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 95.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 93.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 93.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 92.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 91.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 89.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 89.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 88.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 85.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 85.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 84.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 84.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 83.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 80.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 79.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 78.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 76.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 75.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 75.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 73.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 72.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 69.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 64.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 61.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 58.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 56.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 56.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 53.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 53.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 52.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 51.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 50.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 47.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 46.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 44.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 100.2
FF:10159-103A6 76 years, female 157.0
FF:10181-103D1 60 years, female 43.3

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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