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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:325.7 nTPM
HPA Brain:80.0 nTPM
GTEx:325.7 nTPM
FANTOM5:137.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.0
Sample id Sample description nTPM
Amygdala
nTPM: 80.0
2695 Female, age 67, right hemisphere 120.5
2814 Male, age 76, right hemisphere 94.5
1987 Female, age 91, left hemisphere 67.0
2514 Male, age 75, right hemisphere 60.4
2517 Female, age 94, left hemisphere 57.6
Basal amygdala
nTPM: 54.5
2609 Male, age 75, right hemisphere 90.2
2110 Male, age 80, left hemisphere 58.3
1955 Male, age 76, both hemispheres 53.9
2685 Female, age 94, left hemisphere 47.4
2243 Female, age 91, right hemisphere 47.3
2827 Female, age 67, right hemisphere 29.9
Central amygdala
nTPM: 64.4
1905 Male, age 76, both hemispheres 80.9
2826 Female, age 94, left hemisphere 68.3
2515 Male, age 75, right hemisphere 67.5
2239 Male, age 80, left hemisphere 57.5
2701 Female, age 91, right hemisphere 47.6
Corticomedial amygdala
nTPM: 48.4
2428 Male, age 75, right hemisphere 78.1
2829 Male, age 80, left hemisphere 69.5
2429 Female, age 94, left hemisphere 50.2
2240 Male, age 76, both hemispheres 35.7
2242 Female, age 91, right hemisphere 30.1
2535 Female, age 67, right hemisphere 26.7
Lateral amygdala
nTPM: 49.9
2516 Male, age 75, right hemisphere 68.1
1883 Male, age 76, both hemispheres 60.6
2256 Male, age 80, left hemisphere 51.1
2255 Female, age 91, right hemisphere 47.7
2534 Female, age 94, left hemisphere 43.3
2830 Female, age 67, right hemisphere 28.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 325.7
Samples: 181

Max nTPM: 1433.0
Min nTPM: 62.2
Std nTPM: 212.3
Median nTPM: 260.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1433.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1267.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 900.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 886.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 849.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 784.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 770.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 762.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 757.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 754.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 726.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 667.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 639.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 635.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 617.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 611.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 596.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 587.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 577.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 572.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 564.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 554.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 549.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 544.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 539.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 535.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 523.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 518.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 512.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 506.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 505.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 498.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 497.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 492.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 487.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 486.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 482.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 475.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 471.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 471.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 466.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 465.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 458.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 454.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 446.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 445.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 444.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 443.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 427.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 421.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 420.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 420.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 413.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 409.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 407.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 406.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 403.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 382.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 363.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 351.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 349.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 348.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 348.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 345.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 344.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 338.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 327.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 326.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 318.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 313.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 313.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 305.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 297.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 288.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 286.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 285.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 285.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 285.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 281.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 280.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 278.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 278.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 277.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 271.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 270.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 269.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 265.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 263.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 263.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 263.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 260.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 259.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 256.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 252.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 251.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 249.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 248.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 247.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 247.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 247.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 246.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 244.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 236.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 230.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 227.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 225.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 224.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 221.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 221.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 219.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 219.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 216.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 214.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 210.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 208.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 207.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 206.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 206.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 204.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 199.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 197.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 193.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 192.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 191.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 191.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 190.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 190.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 187.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 187.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 187.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 184.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 181.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 180.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 178.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 177.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 177.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 175.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 174.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 174.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 174.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 173.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 172.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 170.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 169.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 167.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 167.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 166.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 165.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 164.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 162.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 159.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 152.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 152.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 151.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 149.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 147.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 146.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 129.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 127.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 126.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 121.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 118.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 118.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 117.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 113.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 112.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 109.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 106.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 99.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 95.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 90.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 83.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 80.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 62.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 137.6
FF:10151-102I7 76 years, female 137.6

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