MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:577.3 nTPM
HPA Brain:109.4 nTPM
GTEx:577.3 nTPM
FANTOM5:145.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.4
2586 Male, age 75, left hemisphere 164.5
2828 Female, age 72, unknown 99.7
1827 Male, age 72, unknown 92.8
1870 Female, age 42, unknown 85.7
2411 Female, age 72, unknown 77.5
2666 Male, age 74, left hemisphere 76.9
1833 Male, age 53, unknown 75.8
1830 Male, age 51, unknown 75.3
2019 Male, age 18, unknown 56.1
2219 Male, age 76, both hemispheres 39.2
Dorsal raphe nucleus
nTPM: 102.8
2016 Female, age 72, unknown 124.6
1828 Male, age 53, unknown 118.8
2047 Male, age 72, unknown 93.2
2750 Male, age 76, both hemispheres 89.4
2298 Female, age 72, unknown 88.1
Inferior colliculus
nTPM: 89.3
1848 Female, age 42, unknown 103.7
2097 Female, age 72, unknown 93.1
2849 Male, age 72, unknown 86.1
1890 Male, age 53, unknown 74.4
Median raphe nucleus
nTPM: 89.3
2220 Male, age 76, midline 89.3
Periaquaductal grey, anterior
nTPM: 87.1
1795 Male, age 51, unknown 92.7
2502 Female, age 75, unknown 86.7
1947 Male, age 18, unknown 82.0
Periaquaductal grey, dorsal
nTPM: 98.8
2850 Male, age 76, both hemispheres 129.0
1840 Male, age 53, unknown 109.5
1831 Male, age 72, unknown 82.7
2464 Female, age 72, unknown 74.1
Periaquaductal grey, lateral
nTPM: 102.8
2053 Male, age 18, unknown 121.1
2140 Male, age 76, both hemispheres 119.8
2272 Male, age 74, both hemispheres 67.5
Pretectal area
nTPM: 92.6
2667 Female, age 75, unknown 118.3
2316 Male, age 76, right hemisphere 111.7
2273 Male, age 74, both hemispheres 101.6
1944 Female, age 72, unknown 100.8
1816 Male, age 51, unknown 99.6
2825 Male, age 18, unknown 99.1
2224 Female, age 72, unknown 95.5
1817 Female, age 42, unknown 90.6
1815 Male, age 53, unknown 83.4
2007 Male, age 72, unknown 69.4
2407 Male, age 75, both hemispheres 48.1
Red nucleus
nTPM: 95.1
1821 Female, age 72, unknown 144.8
2725 Female, age 75, unknown 110.6
2227 Male, age 72, unknown 108.7
2769 Male, age 72, unknown 108.7
2503 Female, age 72, unknown 107.8
2823 Male, age 76, right hemisphere 106.0
1954 Female, age 42, unknown 103.4
2588 Male, age 74, left hemisphere 85.4
1865 Male, age 51, unknown 84.1
1904 Male, age 53, unknown 66.9
2584 Male, age 75, left hemisphere 60.3
2785 Male, age 18, unknown 54.7
Substantia nigra
nTPM: 109.4
2699 Male, age 18, unknown 177.1
1916 Female, age 42, unknown 155.4
1851 Male, age 51, unknown 139.1
2409 Female, age 72, unknown 114.8
1889 Female, age 72, unknown 104.1
2241 Male, age 72, unknown 96.6
2590 Female, age 75, unknown 83.5
2665 Male, age 74, both hemispheres 80.3
2583 Male, age 75, right hemisphere 72.4
1941 Male, age 53, unknown 70.4
Superior colliculus
nTPM: 93.1
1796 Male, age 53, unknown 126.7
2087 Female, age 72, unknown 105.6
1995 Male, age 72, unknown 102.6
2261 Male, age 18, unknown 101.1
1839 Male, age 51, unknown 95.7
2587 Male, age 74, left hemisphere 91.4
1913 Female, age 42, unknown 84.9
1895 Male, age 76, right hemisphere 81.5
2668 Female, age 75, unknown 72.7
2664 Male, age 75, both hemispheres 69.1
Ventral tegmental area
nTPM: 97.2
2021 Male, age 53, unknown 138.2
2410 Female, age 72, unknown 118.9
1915 Female, age 42, unknown 108.7
2218 Male, age 76, both hemispheres 94.7
1942 Male, age 51, unknown 65.0
2223 Female, age 72, unknown 57.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 577.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 577.3
Samples: 183

Max nTPM: 2750.6
Min nTPM: 51.2
Std nTPM: 443.9
Median nTPM: 426.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2750.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2025.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 1740.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1710.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1704.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1658.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1640.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1625.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1524.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1479.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1469.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 145.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.5
FF:10158-103A5 76 years, female 145.5

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