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  • NAP1L4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:128.7 nTPM
HPA Brain:102.4 nTPM
GTEx:128.7 nTPM
FANTOM5:109.4 Scaled Tags Per Million
Pig:63.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 89.5
2194 Female, age 79, both hemispheres 97.5
2048 Male, age 55, midline 90.9
2816 Male, age 47, midline 89.3
1981 Female, age 72, midline 87.2
2565 Male, age 75, midline 82.4
Cervical spinal cord, dorsal horn
nTPM: 85.8
2173 Female, age 72, unknown 99.5
2296 Male, age 66, both hemispheres 99.3
2069 Male, age 47, both hemispheres 88.5
1877 Male, age 55, unknown 84.0
2297 Male, age 75, both hemispheres 73.8
2721 Male, age 90, both hemispheres 69.9
Cervical spinal cord, ventral horn
nTPM: 102.4
2480 Male, age 75, both hemispheres 124.9
2295 Male, age 66, both hemispheres 106.9
2820 Female, age 79, both hemispheres 103.2
2068 Male, age 55, unknown 98.4
2809 Male, age 90, both hemispheres 95.6
2098 Female, age 72, unknown 85.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 128.7
Samples: 204

Max nTPM: 204.3
Min nTPM: 67.0
Std nTPM: 27.6
Median nTPM: 126.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 204.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 199.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 191.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 188.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 185.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 183.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 183.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 180.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 179.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 178.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 178.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 178.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 178.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 176.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 175.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 175.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 174.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 173.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 171.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 169.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 167.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 167.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 167.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 166.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 166.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 166.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 162.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 162.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 161.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 161.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 159.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 157.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 157.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 157.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 156.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 155.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 154.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 152.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 152.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 151.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 151.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 151.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 150.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 150.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 150.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 149.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 149.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 147.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 147.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 145.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 145.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 144.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 144.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 143.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 142.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 142.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 142.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 141.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 140.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 140.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 139.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 139.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 139.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 139.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 139.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 137.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 136.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 136.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 136.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 136.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 135.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 135.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 135.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 135.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 133.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 133.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 133.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 131.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 131.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 131.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 131.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 131.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 131.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 130.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 130.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 130.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 130.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 130.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 129.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 128.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 128.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 128.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 128.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 127.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 127.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 127.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 127.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 127.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 127.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 127.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 126.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 126.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 126.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 126.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 126.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 126.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 126.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 125.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 125.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 125.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 125.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 124.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 124.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 124.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 124.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 123.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 123.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 122.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 122.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 122.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 122.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 122.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 122.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 121.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 121.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 120.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 120.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 120.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 119.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 119.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 118.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 118.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 118.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 118.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 117.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 116.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 116.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 115.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 115.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 115.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 115.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 115.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 114.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 114.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 114.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 114.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 113.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 112.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 112.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 112.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 111.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 111.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 111.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 111.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 110.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 110.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 109.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 108.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 108.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 107.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 107.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 107.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 107.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 107.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 106.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 106.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 104.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 104.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 104.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 104.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 104.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 103.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 103.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 101.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 101.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 99.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 98.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 98.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 98.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 96.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 96.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 94.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 94.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 93.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 92.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 91.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 90.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 89.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 89.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 86.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 85.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 83.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 83.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 80.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 79.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 78.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 77.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 75.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 70.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 69.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 67.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 109.4
FF:10181-103D1 60 years, female 114.4
FF:10159-103A6 76 years, female 104.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 61.2
Samples: 4

Max nTPM: 64.8
Min nTPM: 56.7
Sample A Female 61.2
Sample B Female 56.7
Sample C Male 64.8
Sample D Male 61.9
Ventral spinal cord
nTPM: 63.2
Samples: 4

Max nTPM: 64.5
Min nTPM: 60.7
Sample A Female 60.7
Sample B Female 64.4
Sample C Male 64.5
Sample D Male 63.1

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