MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.0 nTPM
HPA Brain:105.4 nTPM
GTEx:128.0 nTPM
FANTOM5:125.8 Scaled Tags Per Million
Pig:63.7 nTPM
Mouse:132.7 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 105.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.4
2219 Male, age 76, both hemispheres 128.9
2411 Female, age 72, unknown 116.2
2586 Male, age 75, left hemisphere 115.8
1833 Male, age 53, unknown 106.3
2019 Male, age 18, unknown 102.0
2828 Female, age 72, unknown 100.4
1830 Male, age 51, unknown 99.4
1870 Female, age 42, unknown 97.9
1827 Male, age 72, unknown 94.5
2666 Male, age 74, left hemisphere 92.2
Dorsal raphe nucleus
nTPM: 105.3
2750 Male, age 76, both hemispheres 113.6
1828 Male, age 53, unknown 109.3
2016 Female, age 72, unknown 109.0
2047 Male, age 72, unknown 104.9
2298 Female, age 72, unknown 89.8
Inferior colliculus
nTPM: 92.4
1890 Male, age 53, unknown 97.1
1848 Female, age 42, unknown 92.7
2097 Female, age 72, unknown 91.8
2849 Male, age 72, unknown 87.9
Median raphe nucleus
nTPM: 94.2
2220 Male, age 76, midline 94.2
Periaquaductal grey, anterior
nTPM: 96.8
2502 Female, age 75, unknown 104.3
1795 Male, age 51, unknown 93.3
1947 Male, age 18, unknown 92.7
Periaquaductal grey, dorsal
nTPM: 89.0
2464 Female, age 72, unknown 92.3
2850 Male, age 76, both hemispheres 90.7
1831 Male, age 72, unknown 88.9
1840 Male, age 53, unknown 84.2
Periaquaductal grey, lateral
nTPM: 78.4
2053 Male, age 18, unknown 83.0
2140 Male, age 76, both hemispheres 77.5
2272 Male, age 74, both hemispheres 74.6
Pretectal area
nTPM: 88.3
2667 Female, age 75, unknown 100.2
2007 Male, age 72, unknown 97.1
1817 Female, age 42, unknown 94.6
2224 Female, age 72, unknown 93.0
1816 Male, age 51, unknown 92.8
1815 Male, age 53, unknown 91.4
1944 Female, age 72, unknown 90.3
2825 Male, age 18, unknown 89.8
2407 Male, age 75, both hemispheres 89.3
2316 Male, age 76, right hemisphere 75.6
2273 Male, age 74, both hemispheres 56.9
Red nucleus
nTPM: 105.1
2503 Female, age 72, unknown 120.5
1821 Female, age 72, unknown 120.4
1904 Male, age 53, unknown 114.8
1954 Female, age 42, unknown 110.4
2227 Male, age 72, unknown 109.2
2769 Male, age 72, unknown 106.4
2823 Male, age 76, right hemisphere 101.7
2588 Male, age 74, left hemisphere 101.0
1865 Male, age 51, unknown 100.4
2785 Male, age 18, unknown 97.2
2725 Female, age 75, unknown 92.0
2584 Male, age 75, left hemisphere 87.1
Substantia nigra
nTPM: 104.8
1916 Female, age 42, unknown 135.8
2241 Male, age 72, unknown 116.3
1851 Male, age 51, unknown 115.7
2699 Male, age 18, unknown 114.7
1941 Male, age 53, unknown 113.5
2665 Male, age 74, both hemispheres 100.4
2409 Female, age 72, unknown 89.6
2590 Female, age 75, unknown 89.6
1889 Female, age 72, unknown 89.3
2583 Male, age 75, right hemisphere 83.3
Superior colliculus
nTPM: 92.4
2664 Male, age 75, both hemispheres 112.7
2668 Female, age 75, unknown 97.7
2587 Male, age 74, left hemisphere 95.3
2087 Female, age 72, unknown 94.3
1839 Male, age 51, unknown 93.4
1796 Male, age 53, unknown 88.7
2261 Male, age 18, unknown 88.1
1895 Male, age 76, right hemisphere 86.5
1913 Female, age 42, unknown 86.3
1995 Male, age 72, unknown 81.1
Ventral tegmental area
nTPM: 100.3
1915 Female, age 42, unknown 110.6
2410 Female, age 72, unknown 106.9
2218 Male, age 76, both hemispheres 106.2
2223 Female, age 72, unknown 105.4
1942 Male, age 51, unknown 94.3
2021 Male, age 53, unknown 78.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 128.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.0
Samples: 183

Max nTPM: 270.3
Min nTPM: 55.8
Std nTPM: 27.7
Median nTPM: 126.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 270.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 202.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 198.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 192.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 188.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 178.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 178.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 176.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 174.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 173.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 172.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.8
FF:10158-103A5 76 years, female 125.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.0
Samples: 4

Max nTPM: 69.4
Min nTPM: 50.5
Sample A Female 69.4
Sample B Female 50.5
Sample C Male 57.3
Sample D Male 50.9
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 74.5
Min nTPM: 52.3
Sample A Female 74.5
Sample B Female 52.3
Sample C Male 66.8
Sample D Male 61.2
Periaqueductal gray
nTPM: 49.3
Samples: 3

Max nTPM: 52.5
Min nTPM: 43.3
Sample B Female 52.5
Sample C Male 52.1
Sample D Male 43.3
Superior colliculi
nTPM: 60.4
Samples: 4

Max nTPM: 66.5
Min nTPM: 51.9
Sample A Female 66.5
Sample B Female 51.9
Sample C Male 63.2
Sample D Male 59.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 132.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 132.7
Samples: 4

Max nTPM: 137.1
Min nTPM: 125.2
Sample A Male 137.1
Sample B Male 134.8
Sample C Female 125.2
Sample D Female 133.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
71789891 Antisense, RP_050921_03_G12, Mouse strain C57BL/6J (56 days, male) 1.5

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