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SLC48A1
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  • SLC48A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:131.3 nTPM
HPA Brain:132.5 nTPM
GTEx:131.3 nTPM
FANTOM5:171.2 Scaled Tags Per Million
Pig:120.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 111.7
1981 Female, age 72, midline 115.3
2194 Female, age 79, both hemispheres 113.0
2816 Male, age 47, midline 112.3
2565 Male, age 75, midline 110.6
2048 Male, age 55, midline 107.4
Cervical spinal cord, dorsal horn
nTPM: 112.3
2173 Female, age 72, unknown 141.9
2296 Male, age 66, both hemispheres 138.4
1877 Male, age 55, unknown 107.1
2069 Male, age 47, both hemispheres 106.3
2721 Male, age 90, both hemispheres 92.4
2297 Male, age 75, both hemispheres 87.6
Cervical spinal cord, ventral horn
nTPM: 132.5
2820 Female, age 79, both hemispheres 144.1
2068 Male, age 55, unknown 141.7
2480 Male, age 75, both hemispheres 135.7
2295 Male, age 66, both hemispheres 127.4
2809 Male, age 90, both hemispheres 123.9
2098 Female, age 72, unknown 122.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 131.3
Samples: 204

Max nTPM: 247.6
Min nTPM: 44.0
Std nTPM: 41.0
Median nTPM: 128.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 247.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 239.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 232.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 218.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 215.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 215.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 207.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 203.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 201.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 199.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 198.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 197.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 197.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 196.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 195.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 192.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 190.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 189.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 189.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 189.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 188.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 186.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 185.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 185.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 183.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 180.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 180.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 179.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 179.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 178.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 176.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 176.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 175.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 175.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 174.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 174.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 173.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 171.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 171.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 169.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 169.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 168.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 167.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 165.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 164.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 163.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 162.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 162.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 162.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 160.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 160.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 159.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 158.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 158.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 158.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 157.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 157.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 156.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 155.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 154.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 154.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 153.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 151.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 150.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 149.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 148.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 148.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 147.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 146.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 146.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 145.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 145.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 144.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 144.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 143.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 142.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 142.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 142.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 141.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 141.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 139.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 139.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 138.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 137.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 136.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 135.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 134.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 134.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 134.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 134.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 133.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 132.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 132.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 132.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 132.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 132.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 131.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 131.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 130.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 129.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 128.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 128.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 128.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 127.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 126.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 126.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 126.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 125.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 125.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 124.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 124.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 123.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 123.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 123.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 123.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 121.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 120.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 120.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 120.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 119.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 119.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 119.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 118.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 117.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 117.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 116.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 116.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 115.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 115.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 114.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 114.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 114.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 113.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 113.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 113.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 112.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 111.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 111.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 110.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 109.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 109.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 109.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 108.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 107.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 106.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 106.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 106.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 106.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 105.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 105.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 104.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 103.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 102.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 102.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 102.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 101.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 100.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 99.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 99.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 98.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 98.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 97.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 96.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 96.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 94.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 92.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 92.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 91.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 91.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 91.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 91.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 90.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 90.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 89.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 89.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 89.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 86.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 86.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 85.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 84.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 83.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 81.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 77.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 74.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 73.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 73.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 72.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 72.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 68.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 67.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 67.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 66.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 65.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 62.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 62.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 62.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 62.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 58.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 57.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 56.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 48.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 44.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

171.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 171.2
FF:10181-103D1 60 years, female 207.5
FF:10159-103A6 76 years, female 134.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 93.3
Samples: 4

Max nTPM: 107.8
Min nTPM: 70.7
Sample A Female 107.8
Sample B Female 92.3
Sample C Male 70.7
Sample D Male 102.5
Ventral spinal cord
nTPM: 120.4
Samples: 4

Max nTPM: 130.0
Min nTPM: 112.5
Sample A Female 130.0
Sample B Female 123.9
Sample C Male 112.5
Sample D Male 115.2

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