MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.6 nTPM
HPA Brain:179.9 nTPM
GTEx:93.6 nTPM
FANTOM5:245.2 Scaled Tags Per Million
Pig:104.0 nTPM
Mouse:124.4 nTPM
Allen mouse:9.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 179.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 151.5
2586 Male, age 75, left hemisphere 185.2
1833 Male, age 53, unknown 177.3
1830 Male, age 51, unknown 165.6
2019 Male, age 18, unknown 165.3
2828 Female, age 72, unknown 157.6
1870 Female, age 42, unknown 156.7
2411 Female, age 72, unknown 155.4
2666 Male, age 74, left hemisphere 132.3
1827 Male, age 72, unknown 113.4
2219 Male, age 76, both hemispheres 105.9
Dorsal raphe nucleus
nTPM: 108.7
2750 Male, age 76, both hemispheres 152.1
1828 Male, age 53, unknown 115.9
2016 Female, age 72, unknown 108.9
2047 Male, age 72, unknown 90.9
2298 Female, age 72, unknown 76.0
Inferior colliculus
nTPM: 108.4
2849 Male, age 72, unknown 120.5
1848 Female, age 42, unknown 114.3
1890 Male, age 53, unknown 108.7
2097 Female, age 72, unknown 90.2
Median raphe nucleus
nTPM: 100.4
2220 Male, age 76, midline 100.4
Periaquaductal grey, anterior
nTPM: 100.7
2502 Female, age 75, unknown 108.0
1947 Male, age 18, unknown 106.3
1795 Male, age 51, unknown 87.7
Periaquaductal grey, dorsal
nTPM: 92.9
2464 Female, age 72, unknown 115.4
1831 Male, age 72, unknown 94.7
2850 Male, age 76, both hemispheres 90.3
1840 Male, age 53, unknown 71.4
Periaquaductal grey, lateral
nTPM: 92.2
2053 Male, age 18, unknown 98.2
2140 Male, age 76, both hemispheres 92.6
2272 Male, age 74, both hemispheres 85.9
Pretectal area
nTPM: 113.5
1815 Male, age 53, unknown 146.0
1817 Female, age 42, unknown 139.1
2407 Male, age 75, both hemispheres 135.3
2667 Female, age 75, unknown 128.3
2316 Male, age 76, right hemisphere 120.3
2007 Male, age 72, unknown 119.9
2825 Male, age 18, unknown 111.6
1816 Male, age 51, unknown 94.5
1944 Female, age 72, unknown 92.4
2273 Male, age 74, both hemispheres 81.6
2224 Female, age 72, unknown 79.7
Red nucleus
nTPM: 179.9
1865 Male, age 51, unknown 205.9
1904 Male, age 53, unknown 201.5
1821 Female, age 72, unknown 197.2
2823 Male, age 76, right hemisphere 196.3
2769 Male, age 72, unknown 189.9
2227 Male, age 72, unknown 184.8
2785 Male, age 18, unknown 183.2
1954 Female, age 42, unknown 176.6
2588 Male, age 74, left hemisphere 176.1
2503 Female, age 72, unknown 163.9
2584 Male, age 75, left hemisphere 152.8
2725 Female, age 75, unknown 131.1
Substantia nigra
nTPM: 120.3
2583 Male, age 75, right hemisphere 147.9
1851 Male, age 51, unknown 134.7
2409 Female, age 72, unknown 128.3
1889 Female, age 72, unknown 123.9
2699 Male, age 18, unknown 118.9
2590 Female, age 75, unknown 117.4
2665 Male, age 74, both hemispheres 112.7
1916 Female, age 42, unknown 109.8
1941 Male, age 53, unknown 105.5
2241 Male, age 72, unknown 103.8
Superior colliculus
nTPM: 133.4
1995 Male, age 72, unknown 169.4
1913 Female, age 42, unknown 168.4
2668 Female, age 75, unknown 146.8
2664 Male, age 75, both hemispheres 142.0
1839 Male, age 51, unknown 138.4
1895 Male, age 76, right hemisphere 131.5
2587 Male, age 74, left hemisphere 122.9
1796 Male, age 53, unknown 109.6
2261 Male, age 18, unknown 102.5
2087 Female, age 72, unknown 102.4
Ventral tegmental area
nTPM: 121.7
2223 Female, age 72, unknown 149.6
2410 Female, age 72, unknown 143.7
2218 Male, age 76, both hemispheres 112.5
1915 Female, age 42, unknown 109.8
2021 Male, age 53, unknown 107.9
1942 Male, age 51, unknown 106.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 93.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.6
Samples: 183

Max nTPM: 279.7
Min nTPM: 37.4
Std nTPM: 35.2
Median nTPM: 86.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 279.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 221.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 205.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 198.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 186.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 179.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 175.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 171.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 165.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 157.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 153.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 245.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 245.2
FF:10158-103A5 76 years, female 245.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 104.0
Samples: 4

Max nTPM: 131.2
Min nTPM: 72.2
Sample A Female 113.1
Sample B Female 72.2
Sample C Male 99.3
Sample D Male 131.2
Midbrain
nTPM: 103.2
Samples: 4

Max nTPM: 153.3
Min nTPM: 74.9
Sample A Female 153.3
Sample B Female 98.9
Sample C Male 85.7
Sample D Male 74.9
Periaqueductal gray
nTPM: 75.5
Samples: 3

Max nTPM: 88.4
Min nTPM: 68.6
Sample B Female 88.4
Sample C Male 69.5
Sample D Male 68.6
Superior colliculi
nTPM: 90.7
Samples: 4

Max nTPM: 105.7
Min nTPM: 52.9
Sample A Female 105.7
Sample B Female 52.9
Sample C Male 99.4
Sample D Male 104.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 124.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.4
Samples: 4

Max nTPM: 133.6
Min nTPM: 118.7
Sample A Male 119.5
Sample B Male 118.7
Sample C Female 133.6
Sample D Female 125.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
532687 Antisense, RP_040825_01_D10, Mouse strain C57BL/6J (56 days, male) 9.6

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