A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
211.7
nTPM
Monaco:
3746.9
nTPM
Schmiedel:
33.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
211.7
HPA sample
nTPM
Memory B-cell nTPM: 211.7
Samples: 6
Max nTPM: 642.3
Min nTPM: 58.5
P10809_1017
642.3
P10809_1025
195.3
P10809_1044
58.5
P10809_1063
112.6
P10809_1092
90.1
P10809_1105
171.5
Naive B-cell nTPM: 65.4
Samples: 6
Max nTPM: 97.4
Min nTPM: 36.1
P10809_1011
50.2
P10809_1029
75.7
P10809_1048
97.4
P10809_1067
49.6
P10809_1091
83.2
P10809_1104
36.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3746.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1769.9
Samples: 4
Max nTPM: 2897.1
Min nTPM: 1116.3
RHH5310_R3677
2897.1
RHH5218_R3590
1116.3
RHH5247_R3619
1478.1
RHH5276_R3648
1588.1
Naive B-cell nTPM: 145.9
Samples: 4
Max nTPM: 290.7
Min nTPM: 85.4
RHH5308_R3675
89.8
RHH5216_R3588
117.8
RHH5245_R3617
85.4
RHH5274_R3646
290.7
Non-switched memory B-cell nTPM: 181.8
Samples: 4
Max nTPM: 247.7
Min nTPM: 125.8
RHH5309_R3676
170.3
RHH5217_R3589
125.8
RHH5246_R3618
247.7
RHH5275_R3647
183.4
Plasmablast nTPM: 3746.9
Samples: 4
Max nTPM: 6008.0
Min nTPM: 1824.7
RHH5312_R3679
6008.0
RHH5220_R3592
1824.7
RHH5249_R3621
4830.2
RHH5278_R3650
2324.5
Switched memory B-cell nTPM: 591.7
Samples: 4
Max nTPM: 813.3
Min nTPM: 298.0
RHH5311_R3678
750.6
RHH5219_R3591
298.0
RHH5248_R3620
813.3
RHH5277_R3649
505.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.6
Schmiedel sample id
TPM
Naive B-cell TPM: 33.6
Samples: 91
Max TPM: 126.7
Min TPM: 2.0
B_CELL_NAIVE_1
126.7
B_CELL_NAIVE_2
100.6
B_CELL_NAIVE_3
86.7
B_CELL_NAIVE_4
83.5
B_CELL_NAIVE_5
83.4
B_CELL_NAIVE_6
81.2
B_CELL_NAIVE_7
79.6
B_CELL_NAIVE_8
70.1
B_CELL_NAIVE_9
63.7
B_CELL_NAIVE_10
63.0
B_CELL_NAIVE_11
60.5
B_CELL_NAIVE_12
59.7
B_CELL_NAIVE_13
57.7
B_CELL_NAIVE_14
56.8
B_CELL_NAIVE_15
54.5
B_CELL_NAIVE_16
52.2
B_CELL_NAIVE_17
50.8
B_CELL_NAIVE_18
49.3
B_CELL_NAIVE_19
48.4
B_CELL_NAIVE_20
48.0
B_CELL_NAIVE_21
47.5
B_CELL_NAIVE_22
46.8
B_CELL_NAIVE_23
46.8
B_CELL_NAIVE_24
44.4
B_CELL_NAIVE_25
42.9
B_CELL_NAIVE_26
42.8
B_CELL_NAIVE_27
42.0
B_CELL_NAIVE_28
41.9
B_CELL_NAIVE_29
40.1
B_CELL_NAIVE_30
39.0
B_CELL_NAIVE_31
38.1
B_CELL_NAIVE_32
37.9
B_CELL_NAIVE_33
36.9
B_CELL_NAIVE_34
36.4
B_CELL_NAIVE_35
34.3
B_CELL_NAIVE_36
34.2
B_CELL_NAIVE_37
34.2
B_CELL_NAIVE_38
32.1
B_CELL_NAIVE_39
31.7
B_CELL_NAIVE_40
29.7
B_CELL_NAIVE_41
29.6
B_CELL_NAIVE_42
29.6
B_CELL_NAIVE_43
29.5
B_CELL_NAIVE_44
28.7
B_CELL_NAIVE_45
28.3
B_CELL_NAIVE_46
28.2
B_CELL_NAIVE_47
27.7
B_CELL_NAIVE_48
27.0
B_CELL_NAIVE_49
26.7
B_CELL_NAIVE_50
26.1
B_CELL_NAIVE_51
26.1
B_CELL_NAIVE_52
25.9
B_CELL_NAIVE_53
25.6
B_CELL_NAIVE_54
23.9
B_CELL_NAIVE_55
23.7
B_CELL_NAIVE_56
22.7
B_CELL_NAIVE_57
22.6
B_CELL_NAIVE_58
22.6
B_CELL_NAIVE_59
21.7
B_CELL_NAIVE_60
21.5
B_CELL_NAIVE_61
20.6
B_CELL_NAIVE_62
20.4
B_CELL_NAIVE_63
20.2
B_CELL_NAIVE_64
19.5
B_CELL_NAIVE_65
19.4
B_CELL_NAIVE_66
19.4
B_CELL_NAIVE_67
18.1
B_CELL_NAIVE_68
17.5
B_CELL_NAIVE_69
17.3
B_CELL_NAIVE_70
16.4
B_CELL_NAIVE_71
16.4
B_CELL_NAIVE_72
15.3
B_CELL_NAIVE_73
14.1
B_CELL_NAIVE_74
14.0
B_CELL_NAIVE_75
13.6
B_CELL_NAIVE_76
13.2
B_CELL_NAIVE_77
11.5
B_CELL_NAIVE_78
10.6
B_CELL_NAIVE_79
10.3
B_CELL_NAIVE_80
10.1
B_CELL_NAIVE_81
9.4
B_CELL_NAIVE_82
9.4
B_CELL_NAIVE_83
6.9
B_CELL_NAIVE_84
6.5
B_CELL_NAIVE_85
6.4
B_CELL_NAIVE_86
5.7
B_CELL_NAIVE_87
5.6
B_CELL_NAIVE_88
4.4
B_CELL_NAIVE_89
4.0
B_CELL_NAIVE_90
2.4
B_CELL_NAIVE_91
2.0
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