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BETA
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  • MT-ND4L
EVOLUTIONARY PONS Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PONS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:35424.3 nTPM
Macaque:58124.2 nTPM
Mouse:1966.8 nTPM
Rat:5202.1 nTPM
Pig:30707.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain Stereo-seq

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35424.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 24405.8
2301 Female, age 85, both hemispheres 36631.0
2188 Female, age 91, both hemispheres 26221.7
1984 Male, age 76, both hemispheres 20151.6
2090 Male, age 80, both hemispheres 14619.0
Dorsal cochlear nucleus
nTPM: 28315.3
2378 Male, age 80, both hemispheres 50177.8
2802 Male, age 74, right hemisphere 25137.9
2187 Female, age 91, both hemispheres 23095.4
2370 Male, age 61, both hemispheres 22286.7
2058 Male, age 76, both hemispheres 20879.0
Dorsal tegmental nucleus
nTPM: 24867.9
2358 Male, age 61, both hemispheres 47123.1
1936 Male, age 76, left hemisphere 21164.0
2083 Male, age 80, both hemispheres 18560.5
2326 Male, age 74, both hemispheres 12623.9
Dorsolateral tegmental area
nTPM: 17038.3
2141 Male, age 76, both hemispheres 25914.0
2337 Male, age 61, both hemispheres 19242.8
2654 Male, age 80, both hemispheres 19025.5
2751 Female, age 85, both hemispheres 11344.6
2360 Male, age 74, both hemispheres 9664.7
Kolliker-Fuse nucleus
nTPM: 28448.7
2793 Female, age 91, left hemisphere 52898.4
2163 Male, age 80, both hemispheres 24545.1
2315 Male, age 76, right hemisphere 7902.6
Lateral lemniscal nuclei
nTPM: 21346.2
2453 Male, age 74, right hemisphere 31714.6
2320 Female, age 91, left hemisphere 27829.1
2169 Male, age 76, both hemispheres 26608.2
2036 Male, age 80, both hemispheres 13364.4
2746 Female, age 85, left hemisphere 7214.6
Lateral parabrachial nucleus
nTPM: 15296.3
2792 Male, age 76, both hemispheres 21699.1
2790 Male, age 61, both hemispheres 19005.2
2139 Female, age 85, right hemisphere 11243.0
2013 Male, age 80, both hemispheres 9237.9
Lateral vestibular nucleus
nTPM: 35424.3
2184 Male, age 76, both hemispheres 44722.4
2311 Male, age 80, both hemispheres 26126.3
Locus coeruleus
nTPM: 23713.6
2720 Male, age 74, both hemispheres 58620.5
2162 Male, age 80, both hemispheres 28323.4
2788 Male, age 74, unknown 24264.1
1980 Male, age 76, both hemispheres 16166.4
2014 Male, age 55, unknown 14496.4
2317 Female, age 72, unknown 13954.3
2123 Female, age 91, both hemispheres 10169.8
Medial parabrachial nucleus
nTPM: 21920.3
2854 Male, age 80, both hemispheres 42854.0
2786 Male, age 76, both hemispheres 26416.1
2156 Male, age 61, both hemispheres 21524.2
2170 Female, age 91, both hemispheres 14399.4
2463 Female, age 85, right hemisphere 4407.7
Medial periolivary nuclei
nTPM: 19662.3
2458 Female, age 91, both hemispheres 40418.9
2171 Female, age 85, both hemispheres 24490.6
2063 Male, age 76, both hemispheres 13059.5
2081 Male, age 80, both hemispheres 12030.2
2791 Male, age 74, right hemisphere 8312.4
Motor facial nucleus
nTPM: 34011.1
2697 Female, age 85, both hemispheres 70286.4
2795 Female, age 91, both hemispheres 57297.5
2327 Male, age 80, both hemispheres 37530.2
2365 Male, age 74, right hemisphere 15588.3
2062 Male, age 76, both hemispheres 12331.2
2126 Male, age 61, both hemispheres 11033.1
Motor trigeminal nucleus
nTPM: 21413.9
2321 Female, age 91, both hemispheres 31743.6
2309 Male, age 76, both hemispheres 20503.7
2560 Male, age 74, both hemispheres 19863.9
2335 Male, age 61, both hemispheres 19584.1
2079 Male, age 80, both hemispheres 15374.2
Nuclei of the trapezoid body
nTPM: 21294.9
2368 Female, age 91, both hemispheres 38258.1
2166 Male, age 80, both hemispheres 26696.5
1983 Male, age 76, both hemispheres 15956.4
2159 Male, age 61, both hemispheres 13408.1
2735 Female, age 85, both hemispheres 12155.5
Nucleus raphe magnus
nTPM: 25666.5
2459 Female, age 91, both hemispheres 35620.6
2172 Female, age 85, both hemispheres 34606.0
2328 Male, age 80, both hemispheres 31294.9
2051 Male, age 76, both hemispheres 20158.0
2455 Male, age 74, both hemispheres 18701.6
2160 Male, age 61, both hemispheres 13618.0
Paramedian reticular nucleus
nTPM: 17597.4
2052 Male, age 76, both hemispheres 22214.6
2313 Male, age 61, both hemispheres 20486.5
2050 Female, age 85, both hemispheres 17270.2
2057 Male, age 80, both hemispheres 10418.4
Pedunculopontine tegmental nucleus
nTPM: 23190.0
2338 Male, age 61, both hemispheres 32722.5
2334 Male, age 80, both hemispheres 24642.7
1921 Female, age 85, both hemispheres 12204.9
Pontine nuclei
nTPM: 13742.7
2787 Female, age 85, both hemispheres 22581.5
2319 Female, age 91, both hemispheres 21361.8
2115 Male, age 80, left hemisphere 14704.8
2454 Male, age 74, left hemisphere 13878.3
1863 Male, age 55, unknown 12756.7
1968 Male, age 76, left hemisphere 11595.2
2109 Female, age 72, unknown 7192.7
2727 Male, age 61, right hemisphere 5870.5
Pontine raphe nucleus
nTPM: 18154.5
2853 Male, age 76, midline 21719.2
2122 Female, age 85, midline 14589.7
Posteroventral cochlear nucleus
nTPM: 17662.8
2341 Male, age 80, both hemispheres 27185.9
2371 Male, age 61, both hemispheres 25876.1
2752 Female, age 85, both hemispheres 13699.9
2135 Female, age 91, both hemispheres 11160.3
2070 Male, age 76, both hemispheres 10392.1
Principal sensory trigeminal nucleus
nTPM: 26945.3
2324 Male, age 76, both hemispheres 45077.9
2367 Female, age 91, left hemisphere 37751.6
2158 Male, age 61, both hemispheres 13394.8
2008 Male, age 80, left hemisphere 11556.7
Reticular pontine nucleus, caudal
nTPM: 26391.9
2457 Female, age 91, both hemispheres 38184.1
2332 Male, age 80, right hemisphere 36786.6
2559 Male, age 74, both hemispheres 16269.3
2092 Male, age 76, both hemispheres 14327.7
Reticular pontine nucleus, oral
nTPM: 24457.1
2366 Female, age 91, both hemispheres 56620.5
2167 Male, age 76, both hemispheres 30659.2
1939 Male, age 80, both hemispheres 13769.0
2361 Male, age 74, both hemispheres 10880.8
2012 Female, age 85, both hemispheres 10356.0
Reticulotegmental nucleus
nTPM: 32971.5
2322 Female, age 91, both hemispheres 39879.5
2333 Male, age 80, both hemispheres 35042.5
2325 Male, age 76, both hemispheres 32472.8
2452 Male, age 74, both hemispheres 24491.3
Spinal trigeminal nucleus, oral
nTPM: 26842.2
2164 Male, age 80, both hemispheres 47787.2
1978 Male, age 76, both hemispheres 20160.5
2737 Female, age 85, both hemispheres 12578.9
Subcoeruleus area
nTPM: 16821.0
1958 Male, age 80, both hemispheres 20302.6
2451 Male, age 74, both hemispheres 19508.4
2323 Female, age 91, left hemisphere 17507.3
2089 Male, age 76, left hemisphere 15423.6
2369 Female, age 85, left hemisphere 11362.8
Superior olive
nTPM: 22022.3
2561 Female, age 91, both hemispheres 44808.4
2329 Male, age 80, right hemisphere 33109.1
2020 Male, age 76, both hemispheres 12769.6
1875 Female, age 85, both hemispheres 10492.2
2364 Male, age 74, right hemisphere 8932.2
Ventral periolivary nuclei
nTPM: 21882.4
2794 Female, age 91, left hemisphere 36310.7
2165 Male, age 80, both hemispheres 29612.9
2130 Female, age 85, both hemispheres 13425.5
2023 Male, age 76, both hemispheres 8180.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 31814.3
2840 Female, age 85, both hemispheres 51580.3
2456 Female, age 91, both hemispheres 38074.0
2359 Male, age 61, both hemispheres 33526.9
2161 Male, age 80, both hemispheres 27218.3
1959 Male, age 76, both hemispheres 21410.4
2449 Male, age 74, both hemispheres 19075.8

PONS - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58124.2
Macaque sample Sample description nTPM
Pons
nTPM: 58124.2
Samples: 2

Max nTPM: 64756.2
Min nTPM: 51492.2
Sample A 51492.2
Sample B 64756.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30707.3
Pig sample Sample description nTPM
Pons
nTPM: 30707.4
Samples: 3

Max nTPM: 36989.4
Min nTPM: 26823.6
Sample A Female 36989.4
Sample B Female 26823.6
Sample C Male 28309.1

PONS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1966.8
Mouse sample Sample description nTPM
Pons
nTPM: 1966.8
Samples: 4

Max nTPM: 2374.5
Min nTPM: 1693.3
Sample A 2374.5
Sample B 1693.3
Sample C 1900.7
Sample D 1898.7

PONS - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5202.1
Rat sample Sample description nTPM
Pons
nTPM: 5202.1
Samples: 4

Max nTPM: 5703.9
Min nTPM: 4119.5
Sample A 5703.9
Sample A 5379.6
Sample A 4119.5
Sample A 5605.3

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