A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.0
nTPM
Monaco:
5.0
nTPM
Schmiedel:
20.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
HPA sample
nTPM
Classical monocyte nTPM: 0.0
Samples: 6
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.0
P10809_1039
0.0
P10809_1058
0.1
P10809_1080
0.0
P10809_1107
0.0
Intermediate monocyte nTPM: 0.0
Samples: 6
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1004
0.0
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.0
P10809_1108
0.0
Non-classical monocyte nTPM: 0.0
Samples: 5
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.1
P10809_1072
0.0
P10809_1082
0.1
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.0
Monaco sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 4
Max nTPM: 1.8
Min nTPM: 0.6
RHH5313_R3680
1.1
RHH5221_R3593
1.8
RHH5250_R3622
0.6
RHH5279_R3651
1.3
Intermediate monocyte nTPM: 1.3
Samples: 4
Max nTPM: 1.7
Min nTPM: 0.9
RHH5314_R3681
1.2
RHH5222_R3594
0.9
RHH5251_R3623
1.7
RHH5280_R3652
1.4
Non-classical monocyte nTPM: 5.0
Samples: 4
Max nTPM: 7.5
Min nTPM: 3.0
RHH5315_R3682
7.5
RHH5223_R3595
4.6
RHH5252_R3624
4.9
RHH5281_R3653
3.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.7
Schmiedel sample id
TPM
Classical monocyte TPM: 0.4
Samples: 91
Max TPM: 0.9
Min TPM: 0.1
MONOCYTES_1
0.9
MONOCYTES_2
0.7
MONOCYTES_3
0.7
MONOCYTES_4
0.6
MONOCYTES_5
0.6
MONOCYTES_6
0.6
MONOCYTES_7
0.6
MONOCYTES_8
0.5
MONOCYTES_9
0.5
MONOCYTES_10
0.5
MONOCYTES_11
0.5
MONOCYTES_12
0.5
MONOCYTES_13
0.5
MONOCYTES_14
0.5
MONOCYTES_15
0.5
MONOCYTES_16
0.5
MONOCYTES_17
0.5
MONOCYTES_18
0.5
MONOCYTES_19
0.5
MONOCYTES_20
0.5
MONOCYTES_21
0.5
MONOCYTES_22
0.5
MONOCYTES_23
0.5
MONOCYTES_24
0.5
MONOCYTES_25
0.5
MONOCYTES_26
0.4
MONOCYTES_27
0.4
MONOCYTES_28
0.4
MONOCYTES_29
0.4
MONOCYTES_30
0.4
MONOCYTES_31
0.4
MONOCYTES_32
0.4
MONOCYTES_33
0.4
MONOCYTES_34
0.4
MONOCYTES_35
0.4
MONOCYTES_36
0.4
MONOCYTES_37
0.4
MONOCYTES_38
0.4
MONOCYTES_39
0.4
MONOCYTES_40
0.4
MONOCYTES_41
0.4
MONOCYTES_42
0.4
MONOCYTES_43
0.3
MONOCYTES_44
0.3
MONOCYTES_45
0.3
MONOCYTES_46
0.3
MONOCYTES_47
0.3
MONOCYTES_48
0.3
MONOCYTES_49
0.3
MONOCYTES_50
0.3
MONOCYTES_51
0.3
MONOCYTES_52
0.3
MONOCYTES_53
0.3
MONOCYTES_54
0.3
MONOCYTES_55
0.3
MONOCYTES_56
0.3
MONOCYTES_57
0.3
MONOCYTES_58
0.3
MONOCYTES_59
0.3
MONOCYTES_60
0.3
MONOCYTES_61
0.3
MONOCYTES_62
0.3
MONOCYTES_63
0.3
MONOCYTES_64
0.3
MONOCYTES_65
0.3
MONOCYTES_66
0.2
MONOCYTES_67
0.2
MONOCYTES_68
0.2
MONOCYTES_69
0.2
MONOCYTES_70
0.2
MONOCYTES_71
0.2
MONOCYTES_72
0.2
MONOCYTES_73
0.2
MONOCYTES_74
0.2
MONOCYTES_75
0.2
MONOCYTES_76
0.2
MONOCYTES_77
0.2
MONOCYTES_78
0.2
MONOCYTES_79
0.2
MONOCYTES_80
0.2
MONOCYTES_81
0.2
MONOCYTES_82
0.2
MONOCYTES_83
0.2
MONOCYTES_84
0.2
MONOCYTES_85
0.2
MONOCYTES_86
0.2
MONOCYTES_87
0.1
MONOCYTES_88
0.1
MONOCYTES_89
0.1
MONOCYTES_90
0.1
MONOCYTES_91
0.1
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Non-classical monocyte TPM: 20.7
Samples: 90
Max TPM: 54.2
Min TPM: 5.8
M2_1
54.2
M2_2
50.5
M2_3
46.2
M2_4
43.3
M2_5
43.2
M2_6
39.8
M2_7
37.6
M2_8
35.0
M2_9
34.9
M2_10
34.3
M2_11
33.3
M2_12
32.8
M2_13
32.0
M2_14
31.5
M2_15
31.0
M2_16
30.8
M2_17
28.6
M2_18
28.3
M2_19
28.1
M2_20
26.5
M2_21
26.4
M2_22
26.4
M2_23
26.3
M2_24
25.8
M2_25
25.7
M2_26
25.6
M2_27
25.2
M2_28
25.0
M2_29
24.6
M2_30
24.1
M2_31
23.5
M2_32
23.3
M2_33
22.2
M2_34
22.0
M2_35
21.3
M2_36
20.3
M2_37
20.1
M2_38
20.1
M2_39
19.0
M2_40
19.0
M2_41
18.1
M2_42
17.8
M2_43
17.8
M2_44
17.6
M2_45
17.6
M2_46
17.5
M2_47
17.5
M2_48
17.3
M2_49
16.7
M2_50
16.6
M2_51
16.3
M2_52
16.3
M2_53
15.9
M2_54
15.7
M2_55
15.5
M2_56
15.4
M2_57
14.9
M2_58
14.7
M2_59
14.2
M2_60
14.1
M2_61
13.6
M2_62
13.6
M2_63
13.5
M2_64
13.5
M2_65
13.3
M2_66
13.3
M2_67
13.3
M2_68
13.2
M2_69
13.1
M2_70
12.9
M2_71
12.9
M2_72
12.8
M2_73
12.7
M2_74
12.6
M2_75
12.2
M2_76
12.2
M2_77
12.0
M2_78
12.0
M2_79
11.3
M2_80
11.2
M2_81
10.8
M2_82
10.5
M2_83
10.3
M2_84
10.2
M2_85
10.0
M2_86
8.6
M2_87
8.3
M2_88
7.6
M2_89
7.5
M2_90
5.8
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The Human Protein Atlas project is funded
