BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109795.8 nTPM
HPA Brain:86127.3 nTPM
GTEx:109795.8 nTPM
Macaque:43150.7 nTPM
Mouse:2700.6 nTPM
Rat:10688.7 nTPM
Pig:28464.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 86127.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41385.8
2219 Male, age 76, both hemispheres 112825.1
1833 Male, age 53, unknown 47424.1
2666 Male, age 74, left hemisphere 44289.9
1830 Male, age 51, unknown 42765.8
2828 Female, age 72, unknown 36518.2
2586 Male, age 75, left hemisphere 35434.7
1827 Male, age 72, unknown 26171.7
1870 Female, age 42, unknown 26043.9
2019 Male, age 18, unknown 22272.8
2411 Female, age 72, unknown 20111.4
Dorsal raphe nucleus
nTPM: 21156.3
1828 Male, age 53, unknown 36654.0
2750 Male, age 76, both hemispheres 28267.4
2047 Male, age 72, unknown 16004.5
2016 Female, age 72, unknown 15921.6
2298 Female, age 72, unknown 8934.1
Inferior colliculus
nTPM: 33868.8
2849 Male, age 72, unknown 76709.7
1890 Male, age 53, unknown 25081.2
1848 Female, age 42, unknown 19890.7
2097 Female, age 72, unknown 13793.7
Median raphe nucleus
nTPM: 86127.3
2220 Male, age 76, midline 86127.3
Periaquaductal grey, anterior
nTPM: 25886.6
2502 Female, age 75, unknown 39508.2
1795 Male, age 51, unknown 20437.9
1947 Male, age 18, unknown 17713.8
Periaquaductal grey, dorsal
nTPM: 39098.0
2850 Male, age 76, both hemispheres 79695.9
2464 Female, age 72, unknown 34451.6
1831 Male, age 72, unknown 28271.1
1840 Male, age 53, unknown 13973.5
Periaquaductal grey, lateral
nTPM: 20841.2
2140 Male, age 76, both hemispheres 27946.3
2053 Male, age 18, unknown 17506.2
2272 Male, age 74, both hemispheres 17071.0
Pretectal area
nTPM: 30765.5
1815 Male, age 53, unknown 46758.4
1816 Male, age 51, unknown 46515.2
1817 Female, age 42, unknown 43672.4
2667 Female, age 75, unknown 40172.1
1944 Female, age 72, unknown 35506.9
2825 Male, age 18, unknown 35088.2
2007 Male, age 72, unknown 23503.4
2407 Male, age 75, both hemispheres 20846.1
2224 Female, age 72, unknown 20302.7
2273 Male, age 74, both hemispheres 13236.9
2316 Male, age 76, right hemisphere 12818.0
Red nucleus
nTPM: 32919.9
2503 Female, age 72, unknown 50227.3
1954 Female, age 42, unknown 39663.2
2823 Male, age 76, right hemisphere 39222.8
2227 Male, age 72, unknown 35482.0
2785 Male, age 18, unknown 32295.8
2588 Male, age 74, left hemisphere 32157.8
2725 Female, age 75, unknown 29087.0
2769 Male, age 72, unknown 28927.9
1865 Male, age 51, unknown 28547.3
1904 Male, age 53, unknown 28189.8
2584 Male, age 75, left hemisphere 28026.5
1821 Female, age 72, unknown 23211.8
Substantia nigra
nTPM: 37090.9
2699 Male, age 18, unknown 73580.1
2665 Male, age 74, both hemispheres 65277.4
1916 Female, age 42, unknown 44618.6
1941 Male, age 53, unknown 43419.0
2409 Female, age 72, unknown 34163.3
2241 Male, age 72, unknown 28318.3
2583 Male, age 75, right hemisphere 21654.1
1889 Female, age 72, unknown 21256.2
1851 Male, age 51, unknown 20445.2
2590 Female, age 75, unknown 18176.8
Superior colliculus
nTPM: 26823.8
2664 Male, age 75, both hemispheres 33624.6
2087 Female, age 72, unknown 33101.2
1839 Male, age 51, unknown 32547.4
1913 Female, age 42, unknown 30377.2
2587 Male, age 74, left hemisphere 24399.7
2261 Male, age 18, unknown 24367.1
1995 Male, age 72, unknown 24241.3
1895 Male, age 76, right hemisphere 23932.0
2668 Female, age 75, unknown 22688.9
1796 Male, age 53, unknown 18958.2
Ventral tegmental area
nTPM: 40431.0
2218 Male, age 76, both hemispheres 79684.0
2223 Female, age 72, unknown 53888.4
1942 Male, age 51, unknown 32566.6
1915 Female, age 42, unknown 26027.5
2021 Male, age 53, unknown 25657.8
2410 Female, age 72, unknown 24761.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 109795.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109795.8
Samples: 183

Max nTPM: 420732.9
Min nTPM: 5071.1
Std nTPM: 73073.4
Median nTPM: 90154.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 420732.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 387263.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 383735.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 351284.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 330265.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 315565.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 312214.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 280093.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 276883.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 249867.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 246336.0
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MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 43150.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 35729.9
Samples: 1

Max nTPM: 35729.9
Min nTPM: 35729.9
Sample A 35729.9
Midbrain
nTPM: 43150.7
Samples: 1

Max nTPM: 43150.7
Min nTPM: 43150.7
Sample A 43150.7
Superior colliculi
nTPM: 24464.4
Samples: 1

Max nTPM: 24464.4
Min nTPM: 24464.4
Sample A 24464.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28464.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27064.8
Samples: 3

Max nTPM: 35698.5
Min nTPM: 20570.0
Sample A Female 35698.5
Sample B Female 20570.0
Sample C Male 24925.8
Midbrain
nTPM: 28464.8
Samples: 3

Max nTPM: 43882.3
Min nTPM: 12434.1
Sample B Female 43882.3
Sample C Male 29078.1
Sample D Male 12434.1
Periaqueductal gray
nTPM: 18999.9
Samples: 3

Max nTPM: 22129.0
Min nTPM: 13697.6
Sample B Female 21173.1
Sample C Male 22129.0
Sample D Male 13697.6
Superior colliculi
nTPM: 19624.4
Samples: 4

Max nTPM: 34269.0
Min nTPM: 2187.5
Sample A Female 34269.0
Sample B Female 2187.5
Sample C Male 23676.5
Sample D Male 18364.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2700.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2700.6
Samples: 4

Max nTPM: 3638.5
Min nTPM: 1329.2
Sample A 2270.9
Sample B 1329.2
Sample C 3638.5
Sample D 3563.7

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 10688.7
Rat sample Sample description nTPM
Midbrain
nTPM: 10688.7
Samples: 4

Max nTPM: 14124.3
Min nTPM: 8835.3
Sample A 10168.9
Sample A 9626.2
Sample A 8835.3
Sample A 14124.3

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