MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2742.2 nTPM
HPA Brain:1162.7 nTPM
GTEx:2742.2 nTPM
FANTOM5:86.3 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1162.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 964.0
2586 Male, age 75, left hemisphere 1241.5
2666 Male, age 74, left hemisphere 1189.5
1870 Female, age 42, unknown 1112.5
2411 Female, age 72, unknown 985.0
1827 Male, age 72, unknown 931.8
1833 Male, age 53, unknown 917.2
2828 Female, age 72, unknown 873.4
2219 Male, age 76, both hemispheres 830.2
1830 Male, age 51, unknown 812.4
2019 Male, age 18, unknown 746.5
Dorsal raphe nucleus
nTPM: 973.6
2298 Female, age 72, unknown 1093.0
2016 Female, age 72, unknown 1088.9
1828 Male, age 53, unknown 935.8
2047 Male, age 72, unknown 891.8
2750 Male, age 76, both hemispheres 858.8
Inferior colliculus
nTPM: 1012.5
2849 Male, age 72, unknown 1160.4
1890 Male, age 53, unknown 1087.3
2097 Female, age 72, unknown 950.3
1848 Female, age 42, unknown 851.8
Median raphe nucleus
nTPM: 961.8
2220 Male, age 76, midline 961.8
Periaquaductal grey, anterior
nTPM: 940.9
2502 Female, age 75, unknown 1005.7
1947 Male, age 18, unknown 910.2
1795 Male, age 51, unknown 906.8
Periaquaductal grey, dorsal
nTPM: 1142.5
2850 Male, age 76, both hemispheres 1355.1
1840 Male, age 53, unknown 1273.2
1831 Male, age 72, unknown 1012.3
2464 Female, age 72, unknown 929.4
Periaquaductal grey, lateral
nTPM: 953.9
2053 Male, age 18, unknown 1083.6
2140 Male, age 76, both hemispheres 1074.0
2272 Male, age 74, both hemispheres 703.9
Pretectal area
nTPM: 912.9
2825 Male, age 18, unknown 1085.8
2316 Male, age 76, right hemisphere 1014.1
2224 Female, age 72, unknown 1006.9
1817 Female, age 42, unknown 982.4
1816 Male, age 51, unknown 970.1
2007 Male, age 72, unknown 929.9
2667 Female, age 75, unknown 929.9
1815 Male, age 53, unknown 926.0
1944 Female, age 72, unknown 761.4
2407 Male, age 75, both hemispheres 756.2
2273 Male, age 74, both hemispheres 679.0
Red nucleus
nTPM: 1020.2
2503 Female, age 72, unknown 1248.3
1821 Female, age 72, unknown 1219.7
1865 Male, age 51, unknown 1084.7
2725 Female, age 75, unknown 1059.7
2769 Male, age 72, unknown 1046.5
1904 Male, age 53, unknown 1031.2
2227 Male, age 72, unknown 1029.1
2588 Male, age 74, left hemisphere 1004.9
2584 Male, age 75, left hemisphere 949.2
1954 Female, age 42, unknown 926.4
2785 Male, age 18, unknown 851.6
2823 Male, age 76, right hemisphere 790.7
Substantia nigra
nTPM: 1162.7
2699 Male, age 18, unknown 1651.4
1851 Male, age 51, unknown 1520.8
2665 Male, age 74, both hemispheres 1404.9
2409 Female, age 72, unknown 1170.1
1916 Female, age 42, unknown 1148.1
2241 Male, age 72, unknown 1010.3
1889 Female, age 72, unknown 994.6
2583 Male, age 75, right hemisphere 949.0
2590 Female, age 75, unknown 922.1
1941 Male, age 53, unknown 855.8
Superior colliculus
nTPM: 998.8
2587 Male, age 74, left hemisphere 1165.5
1913 Female, age 42, unknown 1113.4
1995 Male, age 72, unknown 1103.9
2664 Male, age 75, both hemispheres 1064.3
2668 Female, age 75, unknown 1059.0
1796 Male, age 53, unknown 1029.7
1839 Male, age 51, unknown 932.1
1895 Male, age 76, right hemisphere 925.6
2087 Female, age 72, unknown 828.3
2261 Male, age 18, unknown 766.3
Ventral tegmental area
nTPM: 1121.2
1915 Female, age 42, unknown 1329.0
2021 Male, age 53, unknown 1199.1
2223 Female, age 72, unknown 1175.2
2410 Female, age 72, unknown 1114.0
2218 Male, age 76, both hemispheres 977.6
1942 Male, age 51, unknown 932.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2742.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2742.2
Samples: 183

Max nTPM: 6415.3
Min nTPM: 1064.7
Std nTPM: 999.7
Median nTPM: 2516.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 6415.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6125.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6038.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5849.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 5677.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5444.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5223.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 4868.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4822.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 4766.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 4598.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.3
FF:10158-103A5 76 years, female 86.3

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