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RPL41
HPA
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  • SUMMARY

  • TISSUE

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  • RPL41
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3344.5 nTPM
HPA:2960.3 nTPM
GTEx:3344.5 nTPM
FANTOM5:63.5 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA053169
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2960.3
overview
Male, age 65
Small intestine sample 232
nTPM: 3667.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2843.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2568.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2762.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3344.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 3344.5
Samples: 207

Max nTPM: 5658.4
Min nTPM: 1959.3
Std nTPM: 684.8
Median nTPM: 3248.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5658.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 5494.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 5481.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 5178.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 5174.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 5071.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 4879.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 4843.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4807.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 4791.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 4758.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4743.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 4722.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 4648.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 4578.8
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 4533.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4379.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4323.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 4302.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 4236.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 4222.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 4197.7
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 4152.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 4146.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 4129.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 4128.8
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 4096.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 4059.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 4045.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4033.0
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 4030.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3976.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 3973.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3962.3
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 3950.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 3943.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 3927.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 3862.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3837.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3827.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3826.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 3823.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3821.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3809.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 3787.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 3752.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3738.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3737.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3736.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3735.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3732.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 3701.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3683.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3675.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3670.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 3654.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 3654.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 3652.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3644.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3644.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 3611.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3583.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3581.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 3552.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 3551.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 3529.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 3517.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3516.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 3512.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3510.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3508.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 3482.8
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 3479.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 3459.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 3450.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3447.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 3397.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 3386.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3379.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 3378.1
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 3367.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3355.8
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 3354.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3350.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 3343.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3338.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3335.3
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 3334.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 3333.8
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 3333.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3324.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3319.9
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 3319.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3318.6
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 3318.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3295.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 3293.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3284.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3277.5
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 3275.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3266.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 3263.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3257.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 3248.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 3247.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 3246.3
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 3238.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 3230.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 3222.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3221.3
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 3215.2
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 3200.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 3195.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3189.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3181.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3179.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 3179.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 3174.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3160.7
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 3159.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3158.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 3156.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 3150.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 3133.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 3125.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 3121.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3115.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3110.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 3103.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3102.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3085.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 3081.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3074.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3055.2
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 3040.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 3036.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 3035.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 3019.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 3002.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2998.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 2997.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2987.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2982.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2980.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2962.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2958.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2938.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2934.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2933.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2931.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 2931.0
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 2928.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2923.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2922.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2908.3
GTEX-1192X-2526-SM-59868 50-59 years, male 2906.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2902.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2880.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2875.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 2841.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2836.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2831.1
GTEX-178AV-1226-SM-GOR11 40-49 years, male 2825.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2824.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2792.1
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 2787.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2781.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2740.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2739.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2734.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2715.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2713.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2709.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2700.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2692.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2673.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2648.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2646.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 2640.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2630.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2628.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2591.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2585.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2556.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2537.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2530.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2507.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2507.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 2503.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2492.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2469.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2454.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2435.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2419.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2412.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2402.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2397.3
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 2390.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2350.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2348.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2336.8
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 2312.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2291.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2251.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 2240.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2225.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1959.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 63.5
FF:10024-101D6 15,40,85 years, mixed 63.5

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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