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  • HLA-B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:168.2 nTPM
HPA Brain:2.8 nTPM
GTEx:168.2 nTPM
FANTOM5:184.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.8
Sample id Sample description nTPM
Amygdala
nTPM: 2.7
2514 Male, age 75, right hemisphere 4.6
2814 Male, age 76, right hemisphere 2.6
1987 Female, age 91, left hemisphere 2.4
2517 Female, age 94, left hemisphere 1.9
2695 Female, age 67, right hemisphere 1.9
Basal amygdala
nTPM: 1.9
1955 Male, age 76, both hemispheres 2.7
2243 Female, age 91, right hemisphere 2.4
2609 Male, age 75, right hemisphere 2.0
2827 Female, age 67, right hemisphere 1.9
2685 Female, age 94, left hemisphere 1.8
2110 Male, age 80, left hemisphere 0.5
Central amygdala
nTPM: 2.2
1905 Male, age 76, both hemispheres 3.2
2515 Male, age 75, right hemisphere 2.9
2701 Female, age 91, right hemisphere 2.4
2826 Female, age 94, left hemisphere 1.8
2239 Male, age 80, left hemisphere 0.7
Corticomedial amygdala
nTPM: 1.9
2428 Male, age 75, right hemisphere 3.5
2242 Female, age 91, right hemisphere 2.5
2429 Female, age 94, left hemisphere 1.9
2535 Female, age 67, right hemisphere 1.9
2240 Male, age 76, both hemispheres 1.6
2829 Male, age 80, left hemisphere 0.2
Lateral amygdala
nTPM: 2.8
2256 Male, age 80, left hemisphere 4.6
1883 Male, age 76, both hemispheres 3.2
2516 Male, age 75, right hemisphere 2.7
2255 Female, age 91, right hemisphere 2.5
2830 Female, age 67, right hemisphere 1.9
2534 Female, age 94, left hemisphere 1.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 168.2
Samples: 181

Max nTPM: 585.1
Min nTPM: 45.6
Std nTPM: 84.2
Median nTPM: 146.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 585.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 520.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 506.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 458.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 379.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 358.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 342.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 324.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 305.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 302.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 300.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 297.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 296.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 294.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 291.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 287.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 285.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 285.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 282.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 277.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 263.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 260.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 258.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 254.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 254.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 253.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 251.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 243.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 242.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 238.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 234.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 233.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 232.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 228.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 223.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 217.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 216.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 213.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 212.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 211.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 211.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 211.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 207.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 200.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 200.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 192.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 190.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 189.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 186.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 186.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 183.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 183.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 182.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 182.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 182.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 179.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 178.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 176.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 176.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 175.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 174.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 173.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 172.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 172.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 171.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 170.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 169.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 169.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 166.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 165.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 165.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 165.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 164.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 164.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 163.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 162.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 161.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 159.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 157.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 157.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 156.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 156.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 156.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 156.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 154.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 151.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 150.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 149.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 148.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 148.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 146.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 146.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 145.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 142.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 141.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 141.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 141.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 139.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 139.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 139.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 138.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 137.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 137.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 136.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 135.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 135.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 135.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 133.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 133.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 132.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 132.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 131.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 130.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 129.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 129.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 128.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 128.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 125.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 124.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 123.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 121.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 120.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 120.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 120.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 119.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 119.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 119.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 119.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 119.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 117.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 115.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 115.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 114.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 114.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 113.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 109.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 107.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 106.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 105.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 105.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 104.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 104.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 104.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 102.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 102.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 100.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 100.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 100.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 99.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 99.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 98.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 98.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 98.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 97.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 96.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 92.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 91.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 90.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 89.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 88.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 86.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 85.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 85.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 83.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 80.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 79.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 78.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 76.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 74.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 64.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 59.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 58.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 58.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 52.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 45.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 184.7
FF:10151-102I7 76 years, female 184.7

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