MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:268.6 nTPM
HPA Brain:14.5 nTPM
GTEx:268.6 nTPM
FANTOM5:296.1 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.1
1870 Female, age 42, unknown 3.2
2666 Male, age 74, left hemisphere 3.1
1830 Male, age 51, unknown 2.9
1827 Male, age 72, unknown 2.5
2019 Male, age 18, unknown 2.5
2828 Female, age 72, unknown 2.4
2411 Female, age 72, unknown 2.3
1833 Male, age 53, unknown 1.3
2586 Male, age 75, left hemisphere 1.3
2219 Male, age 76, both hemispheres 0.1
Dorsal raphe nucleus
nTPM: 3.1
2016 Female, age 72, unknown 5.2
2298 Female, age 72, unknown 4.1
2750 Male, age 76, both hemispheres 2.7
2047 Male, age 72, unknown 2.5
1828 Male, age 53, unknown 1.2
Inferior colliculus
nTPM: 2.5
2097 Female, age 72, unknown 3.3
2849 Male, age 72, unknown 2.7
1848 Female, age 42, unknown 2.6
1890 Male, age 53, unknown 1.2
Median raphe nucleus
nTPM: 2.1
2220 Male, age 76, midline 2.1
Periaquaductal grey, anterior
nTPM: 2.6
2502 Female, age 75, unknown 2.7
1947 Male, age 18, unknown 2.5
1795 Male, age 51, unknown 2.4
Periaquaductal grey, dorsal
nTPM: 2.1
1831 Male, age 72, unknown 2.5
2464 Female, age 72, unknown 2.5
2850 Male, age 76, both hemispheres 2.3
1840 Male, age 53, unknown 1.2
Periaquaductal grey, lateral
nTPM: 2.8
2272 Male, age 74, both hemispheres 3.5
2053 Male, age 18, unknown 2.5
2140 Male, age 76, both hemispheres 2.5
Pretectal area
nTPM: 2.4
1817 Female, age 42, unknown 3.6
2316 Male, age 76, right hemisphere 2.8
2224 Female, age 72, unknown 2.7
2667 Female, age 75, unknown 2.6
2007 Male, age 72, unknown 2.5
2825 Male, age 18, unknown 2.5
1944 Female, age 72, unknown 2.4
2407 Male, age 75, both hemispheres 2.2
2273 Male, age 74, both hemispheres 1.8
1816 Male, age 51, unknown 1.7
1815 Male, age 53, unknown 1.2
Red nucleus
nTPM: 3.1
1954 Female, age 42, unknown 4.7
1821 Female, age 72, unknown 4.6
2503 Female, age 72, unknown 4.1
1865 Male, age 51, unknown 3.8
2588 Male, age 74, left hemisphere 3.3
2823 Male, age 76, right hemisphere 3.2
2785 Male, age 18, unknown 2.8
2227 Male, age 72, unknown 2.6
2725 Female, age 75, unknown 2.6
2769 Male, age 72, unknown 2.5
2584 Male, age 75, left hemisphere 1.4
1904 Male, age 53, unknown 1.2
Substantia nigra
nTPM: 3.0
2665 Male, age 74, both hemispheres 5.3
1851 Male, age 51, unknown 3.8
2409 Female, age 72, unknown 3.3
1916 Female, age 42, unknown 3.2
1889 Female, age 72, unknown 2.9
2590 Female, age 75, unknown 2.6
2241 Male, age 72, unknown 2.5
2699 Male, age 18, unknown 2.5
2583 Male, age 75, right hemisphere 2.3
1941 Male, age 53, unknown 1.2
Superior colliculus
nTPM: 2.6
1796 Male, age 53, unknown 5.0
1913 Female, age 42, unknown 3.4
2587 Male, age 74, left hemisphere 2.9
2668 Female, age 75, unknown 2.6
1995 Male, age 72, unknown 2.5
2261 Male, age 18, unknown 2.5
1839 Male, age 51, unknown 2.2
1895 Male, age 76, right hemisphere 1.9
2087 Female, age 72, unknown 1.5
2664 Male, age 75, both hemispheres 1.0
Ventral tegmental area
nTPM: 14.5
2021 Male, age 53, unknown 73.0
1915 Female, age 42, unknown 3.5
2410 Female, age 72, unknown 3.4
1942 Male, age 51, unknown 2.9
2218 Male, age 76, both hemispheres 2.9
2223 Female, age 72, unknown 1.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 268.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 268.6
Samples: 183

Max nTPM: 2631.9
Min nTPM: 50.8
Std nTPM: 218.8
Median nTPM: 231.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 2631.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1323.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 702.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 685.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 577.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 565.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 560.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 515.2
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 467.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 465.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 444.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 296.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 296.1
FF:10158-103A5 76 years, female 296.1

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