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  • SUMMARY

  • TISSUE

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  • APOC2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:56.9 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA055877
Glial cells Not detected
Neuronal cells Not detected

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.9
Samples: 300

Max nTPM: 275.1
Min nTPM: 4.4
Std nTPM: 47.3
Median nTPM: 43.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 275.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 266.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 253.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 250.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 244.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 223.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 199.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 185.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 178.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 172.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 169.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 158.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 153.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 151.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 151.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 144.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 144.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 138.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 136.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 135.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 134.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 134.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 134.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 132.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 127.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 126.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 125.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 123.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 123.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 122.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 118.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 117.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 116.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 113.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 110.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 108.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 105.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 105.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 104.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 103.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 102.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 102.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 97.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 95.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 95.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 95.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 93.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 92.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 92.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 92.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 91.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 89.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 89.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 89.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 88.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 86.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 84.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 84.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 83.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 83.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 82.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 82.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 82.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 81.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 81.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 81.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 79.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 79.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 78.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 78.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 78.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 78.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 77.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 77.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 76.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 76.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 75.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 74.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 74.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 74.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 74.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 72.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 72.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 70.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 70.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 69.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 68.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 68.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 68.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 67.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 67.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 65.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 64.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 64.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 64.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 64.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 62.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 62.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 61.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 60.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 59.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 59.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 58.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 58.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 57.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 56.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 56.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 56.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 55.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 54.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 54.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 54.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 54.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 53.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 53.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 53.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 52.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 52.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 52.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 52.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 51.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 51.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 50.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 49.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 49.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 49.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 48.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 48.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 48.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 48.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 48.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 48.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 48.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 47.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 46.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 46.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 46.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 46.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 46.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 45.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 45.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 45.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 45.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 44.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 44.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 44.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 44.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 43.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 43.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 43.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 43.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 43.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 42.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 42.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 41.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 41.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 41.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 40.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 40.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 40.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 40.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 39.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 39.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 38.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 38.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 38.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 38.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 37.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 37.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 37.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 36.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 36.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 36.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 36.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 35.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 35.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 35.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 35.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 35.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 34.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 34.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 34.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 34.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 34.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 34.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 33.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 33.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 33.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 33.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 33.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 32.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 32.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 31.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 31.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 31.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 31.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 30.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 30.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 30.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 30.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 30.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 29.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 28.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 27.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 27.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 27.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 27.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 26.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 26.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 26.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 26.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 26.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 26.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 25.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 25.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 25.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 25.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 25.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 25.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 24.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 24.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 24.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 24.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 24.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 23.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 23.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 23.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 23.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 23.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 23.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 23.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 23.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 22.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 22.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 22.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 21.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 21.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 21.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 21.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 21.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 21.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 21.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 21.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 21.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 21.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 20.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 19.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 19.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 19.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 19.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 19.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 18.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 18.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 18.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 18.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 18.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 18.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 18.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 18.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 17.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 17.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 17.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 16.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 16.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 16.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 15.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 15.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 15.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 15.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 15.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 15.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 14.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 14.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 14.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 14.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 14.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 14.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 14.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 13.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 13.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 13.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 13.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 13.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 13.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 12.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 12.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 12.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 10.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 9.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 9.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 8.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 7.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 7.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 7.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 6.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 5.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 5.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 5.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 4.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 4.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.8
FF:10164-103B2 76 years, female 22.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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