MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.0 nTPM
HPA Brain:44.8 nTPM
GTEx:78.0 nTPM
FANTOM5:51.1 Scaled Tags Per Million
Pig:0.1 nTPM
Mouse:0.0 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
2666 Male, age 74, left hemisphere 38.4
1830 Male, age 51, unknown 28.8
1870 Female, age 42, unknown 28.8
2828 Female, age 72, unknown 28.6
1833 Male, age 53, unknown 26.3
2586 Male, age 75, left hemisphere 24.6
2219 Male, age 76, both hemispheres 22.9
1827 Male, age 72, unknown 22.3
2019 Male, age 18, unknown 21.7
2411 Female, age 72, unknown 21.4
Dorsal raphe nucleus
nTPM: 26.9
2016 Female, age 72, unknown 31.8
1828 Male, age 53, unknown 31.4
2750 Male, age 76, both hemispheres 26.5
2047 Male, age 72, unknown 23.7
2298 Female, age 72, unknown 20.9
Inferior colliculus
nTPM: 24.1
2849 Male, age 72, unknown 32.1
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 22.0
2097 Female, age 72, unknown 18.2
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 17.5
1795 Male, age 51, unknown 21.9
1947 Male, age 18, unknown 17.1
2502 Female, age 75, unknown 13.5
Periaquaductal grey, dorsal
nTPM: 28.0
2850 Male, age 76, both hemispheres 42.7
1831 Male, age 72, unknown 27.5
2464 Female, age 72, unknown 21.4
1840 Male, age 53, unknown 20.3
Periaquaductal grey, lateral
nTPM: 33.4
2140 Male, age 76, both hemispheres 37.5
2272 Male, age 74, both hemispheres 34.8
2053 Male, age 18, unknown 28.0
Pretectal area
nTPM: 26.9
2407 Male, age 75, both hemispheres 51.6
2316 Male, age 76, right hemisphere 44.1
2224 Female, age 72, unknown 29.6
2825 Male, age 18, unknown 26.7
1944 Female, age 72, unknown 26.3
1815 Male, age 53, unknown 25.9
2273 Male, age 74, both hemispheres 25.6
1817 Female, age 42, unknown 21.6
2007 Male, age 72, unknown 15.9
2667 Female, age 75, unknown 15.2
1816 Male, age 51, unknown 13.8
Red nucleus
nTPM: 27.5
2725 Female, age 75, unknown 34.7
1865 Male, age 51, unknown 34.4
2769 Male, age 72, unknown 32.6
2227 Male, age 72, unknown 32.4
1904 Male, age 53, unknown 30.4
2785 Male, age 18, unknown 27.8
2584 Male, age 75, left hemisphere 27.7
2823 Male, age 76, right hemisphere 27.0
2503 Female, age 72, unknown 24.7
1821 Female, age 72, unknown 23.3
1954 Female, age 42, unknown 23.3
2588 Male, age 74, left hemisphere 11.8
Substantia nigra
nTPM: 44.8
2590 Female, age 75, unknown 93.7
2699 Male, age 18, unknown 82.8
1916 Female, age 42, unknown 40.4
1851 Male, age 51, unknown 39.3
2665 Male, age 74, both hemispheres 37.4
2583 Male, age 75, right hemisphere 36.4
2409 Female, age 72, unknown 32.9
2241 Male, age 72, unknown 32.6
1941 Male, age 53, unknown 31.5
1889 Female, age 72, unknown 21.2
Superior colliculus
nTPM: 28.6
1913 Female, age 42, unknown 53.9
2587 Male, age 74, left hemisphere 44.9
1995 Male, age 72, unknown 32.4
2664 Male, age 75, both hemispheres 31.9
1839 Male, age 51, unknown 28.6
1796 Male, age 53, unknown 23.2
1895 Male, age 76, right hemisphere 20.9
2668 Female, age 75, unknown 17.9
2087 Female, age 72, unknown 16.6
2261 Male, age 18, unknown 16.3
Ventral tegmental area
nTPM: 32.2
2021 Male, age 53, unknown 46.0
1915 Female, age 42, unknown 35.2
2218 Male, age 76, both hemispheres 31.3
1942 Male, age 51, unknown 29.7
2223 Female, age 72, unknown 28.6
2410 Female, age 72, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 78.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.0
Samples: 183

Max nTPM: 630.5
Min nTPM: 3.5
Std nTPM: 69.9
Median nTPM: 61.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 630.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 353.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 352.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 329.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 285.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 208.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 206.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 188.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 181.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 167.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 167.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.1
FF:10158-103A5 76 years, female 51.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.0
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.1
Periaqueductal gray
nTPM: 0.1
Samples: 3

Max nTPM: 0.2
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.2
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68632196 Antisense, RP_050125_01_H05, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo