MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:623.4 nTPM
HPA Brain:41.2 nTPM
GTEx:623.4 nTPM
FANTOM5:50.1 Scaled Tags Per Million
Pig:63.8 nTPM
Mouse:307.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.2
2666 Male, age 74, left hemisphere 43.9
2019 Male, age 18, unknown 41.2
2828 Female, age 72, unknown 36.1
1827 Male, age 72, unknown 35.8
1833 Male, age 53, unknown 35.2
1870 Female, age 42, unknown 35.0
1830 Male, age 51, unknown 26.3
2219 Male, age 76, both hemispheres 26.1
2411 Female, age 72, unknown 21.7
2586 Male, age 75, left hemisphere 20.3
Dorsal raphe nucleus
nTPM: 32.4
2298 Female, age 72, unknown 41.3
2016 Female, age 72, unknown 34.9
1828 Male, age 53, unknown 30.2
2047 Male, age 72, unknown 28.4
2750 Male, age 76, both hemispheres 27.1
Inferior colliculus
nTPM: 32.9
2097 Female, age 72, unknown 41.6
1890 Male, age 53, unknown 38.6
2849 Male, age 72, unknown 25.8
1848 Female, age 42, unknown 25.6
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Periaquaductal grey, anterior
nTPM: 25.8
1947 Male, age 18, unknown 28.2
1795 Male, age 51, unknown 27.7
2502 Female, age 75, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 31.3
1831 Male, age 72, unknown 39.5
2464 Female, age 72, unknown 32.1
1840 Male, age 53, unknown 29.7
2850 Male, age 76, both hemispheres 24.1
Periaquaductal grey, lateral
nTPM: 25.9
2140 Male, age 76, both hemispheres 38.5
2053 Male, age 18, unknown 24.2
2272 Male, age 74, both hemispheres 15.0
Pretectal area
nTPM: 31.6
2316 Male, age 76, right hemisphere 42.3
2407 Male, age 75, both hemispheres 38.3
1815 Male, age 53, unknown 37.5
1817 Female, age 42, unknown 33.7
1944 Female, age 72, unknown 33.2
1816 Male, age 51, unknown 31.8
2825 Male, age 18, unknown 31.4
2224 Female, age 72, unknown 28.7
2007 Male, age 72, unknown 24.8
2667 Female, age 75, unknown 24.0
2273 Male, age 74, both hemispheres 21.5
Red nucleus
nTPM: 36.2
2823 Male, age 76, right hemisphere 51.5
2725 Female, age 75, unknown 49.6
1865 Male, age 51, unknown 42.4
2584 Male, age 75, left hemisphere 38.9
1954 Female, age 42, unknown 34.5
2227 Male, age 72, unknown 33.6
1821 Female, age 72, unknown 33.5
1904 Male, age 53, unknown 33.5
2503 Female, age 72, unknown 30.4
2588 Male, age 74, left hemisphere 29.7
2769 Male, age 72, unknown 29.5
2785 Male, age 18, unknown 27.8
Substantia nigra
nTPM: 41.2
2241 Male, age 72, unknown 67.3
2583 Male, age 75, right hemisphere 47.3
2665 Male, age 74, both hemispheres 45.7
2590 Female, age 75, unknown 40.2
1916 Female, age 42, unknown 40.0
2409 Female, age 72, unknown 37.1
2699 Male, age 18, unknown 35.9
1851 Male, age 51, unknown 34.6
1889 Female, age 72, unknown 34.3
1941 Male, age 53, unknown 29.7
Superior colliculus
nTPM: 33.4
2587 Male, age 74, left hemisphere 46.7
2664 Male, age 75, both hemispheres 40.3
2668 Female, age 75, unknown 36.0
1913 Female, age 42, unknown 34.8
2261 Male, age 18, unknown 32.1
1796 Male, age 53, unknown 32.0
1995 Male, age 72, unknown 29.7
1839 Male, age 51, unknown 29.2
1895 Male, age 76, right hemisphere 29.0
2087 Female, age 72, unknown 24.2
Ventral tegmental area
nTPM: 32.3
1915 Female, age 42, unknown 45.6
1942 Male, age 51, unknown 36.8
2021 Male, age 53, unknown 31.3
2218 Male, age 76, both hemispheres 30.5
2223 Female, age 72, unknown 27.2
2410 Female, age 72, unknown 22.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 623.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 623.4
Samples: 183

Max nTPM: 1576.1
Min nTPM: 154.9
Std nTPM: 237.8
Median nTPM: 565.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1576.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1525.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1356.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1271.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1138.4
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1137.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1119.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1096.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1060.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1057.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1041.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.1
FF:10158-103A5 76 years, female 50.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.8
Samples: 4

Max nTPM: 80.9
Min nTPM: 54.1
Sample A Female 80.9
Sample B Female 64.7
Sample C Male 55.5
Sample D Male 54.1
Midbrain
nTPM: 63.6
Samples: 4

Max nTPM: 81.0
Min nTPM: 52.6
Sample A Female 81.0
Sample B Female 66.9
Sample C Male 53.7
Sample D Male 52.6
Periaqueductal gray
nTPM: 51.9
Samples: 3

Max nTPM: 52.5
Min nTPM: 51.1
Sample B Female 52.0
Sample C Male 52.5
Sample D Male 51.1
Superior colliculi
nTPM: 63.7
Samples: 4

Max nTPM: 74.7
Min nTPM: 59.4
Sample A Female 74.7
Sample B Female 59.4
Sample C Male 60.2
Sample D Male 60.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 307.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 307.3
Samples: 4

Max nTPM: 333.7
Min nTPM: 295.7
Sample A Male 333.7
Sample B Male 302.1
Sample C Female 297.7
Sample D Female 295.7

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