A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
87.1
nTPM
Monaco:
7.5
nTPM
Schmiedel:
24.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.1
HPA sample
nTPM
Memory B-cell nTPM: 87.1
Samples: 6
Max nTPM: 292.5
Min nTPM: 6.2
P10809_1017
6.2
P10809_1025
11.7
P10809_1044
292.5
P10809_1063
78.0
P10809_1092
91.2
P10809_1105
43.1
Naive B-cell nTPM: 85.9
Samples: 6
Max nTPM: 265.8
Min nTPM: 13.8
P10809_1011
13.8
P10809_1029
26.7
P10809_1048
265.8
P10809_1067
73.5
P10809_1091
87.0
P10809_1104
48.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 7.5
Samples: 4
Max nTPM: 19.0
Min nTPM: 0.0
RHH5310_R3677
11.1
RHH5218_R3590
0.0
RHH5247_R3619
19.0
RHH5276_R3648
0.0
Naive B-cell nTPM: 3.4
Samples: 4
Max nTPM: 5.0
Min nTPM: 1.4
RHH5308_R3675
4.0
RHH5216_R3588
1.4
RHH5245_R3617
5.0
RHH5274_R3646
3.0
Non-switched memory B-cell nTPM: 5.4
Samples: 4
Max nTPM: 13.3
Min nTPM: 0.0
RHH5309_R3676
7.8
RHH5217_R3589
0.3
RHH5246_R3618
0.0
RHH5275_R3647
13.3
Plasmablast nTPM: 0.7
Samples: 4
Max nTPM: 2.8
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
2.8
RHH5249_R3621
0.0
RHH5278_R3650
0.0
Switched memory B-cell nTPM: 4.6
Samples: 4
Max nTPM: 12.1
Min nTPM: 0.0
RHH5311_R3678
12.1
RHH5219_R3591
0.0
RHH5248_R3620
2.9
RHH5277_R3649
3.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.2
Schmiedel sample id
TPM
Naive B-cell TPM: 24.2
Samples: 91
Max TPM: 41.4
Min TPM: 15.7
B_CELL_NAIVE_1
41.4
B_CELL_NAIVE_2
37.1
B_CELL_NAIVE_3
34.2
B_CELL_NAIVE_4
34.2
B_CELL_NAIVE_5
34.2
B_CELL_NAIVE_6
31.7
B_CELL_NAIVE_7
31.5
B_CELL_NAIVE_8
31.3
B_CELL_NAIVE_9
30.4
B_CELL_NAIVE_10
30.1
B_CELL_NAIVE_11
29.5
B_CELL_NAIVE_12
29.1
B_CELL_NAIVE_13
28.9
B_CELL_NAIVE_14
28.8
B_CELL_NAIVE_15
28.7
B_CELL_NAIVE_16
28.6
B_CELL_NAIVE_17
28.0
B_CELL_NAIVE_18
27.3
B_CELL_NAIVE_19
27.2
B_CELL_NAIVE_20
27.2
B_CELL_NAIVE_21
27.1
B_CELL_NAIVE_22
27.0
B_CELL_NAIVE_23
26.5
B_CELL_NAIVE_24
26.5
B_CELL_NAIVE_25
26.5
B_CELL_NAIVE_26
26.4
B_CELL_NAIVE_27
26.1
B_CELL_NAIVE_28
26.1
B_CELL_NAIVE_29
26.0
B_CELL_NAIVE_30
26.0
B_CELL_NAIVE_31
25.9
B_CELL_NAIVE_32
25.8
B_CELL_NAIVE_33
25.5
B_CELL_NAIVE_34
25.4
B_CELL_NAIVE_35
25.3
B_CELL_NAIVE_36
25.3
B_CELL_NAIVE_37
25.2
B_CELL_NAIVE_38
24.9
B_CELL_NAIVE_39
24.7
B_CELL_NAIVE_40
24.7
B_CELL_NAIVE_41
24.4
B_CELL_NAIVE_42
24.1
B_CELL_NAIVE_43
24.0
B_CELL_NAIVE_44
24.0
B_CELL_NAIVE_45
23.5
B_CELL_NAIVE_46
23.2
B_CELL_NAIVE_47
23.2
B_CELL_NAIVE_48
23.1
B_CELL_NAIVE_49
23.0
B_CELL_NAIVE_50
23.0
B_CELL_NAIVE_51
23.0
B_CELL_NAIVE_52
23.0
B_CELL_NAIVE_53
22.9
B_CELL_NAIVE_54
22.9
B_CELL_NAIVE_55
22.8
B_CELL_NAIVE_56
22.4
B_CELL_NAIVE_57
22.4
B_CELL_NAIVE_58
22.4
B_CELL_NAIVE_59
22.3
B_CELL_NAIVE_60
22.2
B_CELL_NAIVE_61
22.1
B_CELL_NAIVE_62
22.1
B_CELL_NAIVE_63
21.9
B_CELL_NAIVE_64
21.8
B_CELL_NAIVE_65
21.8
B_CELL_NAIVE_66
21.6
B_CELL_NAIVE_67
21.6
B_CELL_NAIVE_68
21.6
B_CELL_NAIVE_69
21.5
B_CELL_NAIVE_70
21.3
B_CELL_NAIVE_71
20.6
B_CELL_NAIVE_72
20.5
B_CELL_NAIVE_73
20.4
B_CELL_NAIVE_74
20.1
B_CELL_NAIVE_75
19.9
B_CELL_NAIVE_76
19.4
B_CELL_NAIVE_77
19.3
B_CELL_NAIVE_78
19.3
B_CELL_NAIVE_79
19.2
B_CELL_NAIVE_80
18.9
B_CELL_NAIVE_81
18.6
B_CELL_NAIVE_82
18.3
B_CELL_NAIVE_83
18.0
B_CELL_NAIVE_84
17.9
B_CELL_NAIVE_85
16.8
B_CELL_NAIVE_86
16.7
B_CELL_NAIVE_87
16.7
B_CELL_NAIVE_88
16.4
B_CELL_NAIVE_89
16.3
B_CELL_NAIVE_90
16.3
B_CELL_NAIVE_91
15.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
