MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:139.1 nTPM
HPA Brain:38.5 nTPM
GTEx:139.1 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:94.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.1
1870 Female, age 42, unknown 41.1
2019 Male, age 18, unknown 39.5
2411 Female, age 72, unknown 38.8
2666 Male, age 74, left hemisphere 34.3
1830 Male, age 51, unknown 32.3
1827 Male, age 72, unknown 31.6
2219 Male, age 76, both hemispheres 30.9
1833 Male, age 53, unknown 29.6
2828 Female, age 72, unknown 27.8
2586 Male, age 75, left hemisphere 25.4
Dorsal raphe nucleus
nTPM: 35.4
2298 Female, age 72, unknown 40.7
2750 Male, age 76, both hemispheres 37.8
2047 Male, age 72, unknown 34.3
1828 Male, age 53, unknown 33.6
2016 Female, age 72, unknown 30.4
Inferior colliculus
nTPM: 37.6
1890 Male, age 53, unknown 40.4
2097 Female, age 72, unknown 38.0
1848 Female, age 42, unknown 37.3
2849 Male, age 72, unknown 34.6
Median raphe nucleus
nTPM: 36.1
2220 Male, age 76, midline 36.1
Periaquaductal grey, anterior
nTPM: 30.0
2502 Female, age 75, unknown 35.0
1795 Male, age 51, unknown 27.7
1947 Male, age 18, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 32.3
2464 Female, age 72, unknown 35.8
2850 Male, age 76, both hemispheres 34.0
1831 Male, age 72, unknown 33.2
1840 Male, age 53, unknown 26.1
Periaquaductal grey, lateral
nTPM: 31.2
2053 Male, age 18, unknown 36.2
2272 Male, age 74, both hemispheres 29.8
2140 Male, age 76, both hemispheres 27.6
Pretectal area
nTPM: 35.9
1816 Male, age 51, unknown 40.4
1817 Female, age 42, unknown 40.3
2007 Male, age 72, unknown 39.5
2224 Female, age 72, unknown 38.6
1944 Female, age 72, unknown 37.0
2273 Male, age 74, both hemispheres 35.9
2667 Female, age 75, unknown 34.7
1815 Male, age 53, unknown 34.3
2825 Male, age 18, unknown 33.1
2407 Male, age 75, both hemispheres 32.0
2316 Male, age 76, right hemisphere 29.1
Red nucleus
nTPM: 38.5
1821 Female, age 72, unknown 53.3
2503 Female, age 72, unknown 44.1
1904 Male, age 53, unknown 42.7
2725 Female, age 75, unknown 39.7
1954 Female, age 42, unknown 38.4
1865 Male, age 51, unknown 37.4
2584 Male, age 75, left hemisphere 36.7
2769 Male, age 72, unknown 35.8
2823 Male, age 76, right hemisphere 35.7
2227 Male, age 72, unknown 35.6
2785 Male, age 18, unknown 33.7
2588 Male, age 74, left hemisphere 29.1
Substantia nigra
nTPM: 37.3
2241 Male, age 72, unknown 44.7
2409 Female, age 72, unknown 42.2
1941 Male, age 53, unknown 40.8
1889 Female, age 72, unknown 40.1
1851 Male, age 51, unknown 39.4
1916 Female, age 42, unknown 36.4
2699 Male, age 18, unknown 33.2
2590 Female, age 75, unknown 32.4
2583 Male, age 75, right hemisphere 32.0
2665 Male, age 74, both hemispheres 31.6
Superior colliculus
nTPM: 35.0
2587 Male, age 74, left hemisphere 44.6
1895 Male, age 76, right hemisphere 38.5
1796 Male, age 53, unknown 37.9
2261 Male, age 18, unknown 36.4
1913 Female, age 42, unknown 36.0
1839 Male, age 51, unknown 34.5
2087 Female, age 72, unknown 34.2
2668 Female, age 75, unknown 33.2
1995 Male, age 72, unknown 32.7
2664 Male, age 75, both hemispheres 21.9
Ventral tegmental area
nTPM: 34.0
2223 Female, age 72, unknown 40.5
2021 Male, age 53, unknown 34.4
2410 Female, age 72, unknown 34.0
2218 Male, age 76, both hemispheres 32.7
1915 Female, age 42, unknown 31.4
1942 Male, age 51, unknown 31.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 139.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 139.1
Samples: 183

Max nTPM: 299.5
Min nTPM: 73.3
Std nTPM: 39.4
Median nTPM: 129.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 299.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 281.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 261.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 258.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 251.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 233.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 228.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 221.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 206.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 205.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 202.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.2
FF:10158-103A5 76 years, female 84.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.4
Samples: 4

Max nTPM: 34.5
Min nTPM: 21.2
Sample A Female 34.5
Sample B Female 31.3
Sample C Male 22.5
Sample D Male 21.2
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 39.5
Min nTPM: 24.1
Sample A Female 39.5
Sample B Female 31.6
Sample C Male 28.2
Sample D Male 24.1
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 22.6
Min nTPM: 20.4
Sample B Female 20.7
Sample C Male 20.4
Sample D Male 22.6
Superior colliculi
nTPM: 32.3
Samples: 4

Max nTPM: 37.0
Min nTPM: 26.3
Sample A Female 35.3
Sample B Female 37.0
Sample C Male 30.7
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.3
Samples: 4

Max nTPM: 107.9
Min nTPM: 79.1
Sample A Male 96.2
Sample B Male 93.8
Sample C Female 79.1
Sample D Female 107.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69116817 Antisense, RP_050321_01_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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