A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.6
nTPM
Monaco:
86.5
nTPM
Schmiedel:
40.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.6
HPA sample
nTPM
Classical monocyte nTPM: 10.5
Samples: 6
Max nTPM: 17.5
Min nTPM: 6.2
P10809_1003
17.5
P10809_1020
10.2
P10809_1039
6.2
P10809_1058
9.9
P10809_1080
10.4
P10809_1107
8.7
Intermediate monocyte nTPM: 11.6
Samples: 6
Max nTPM: 17.6
Min nTPM: 7.2
P10809_1004
17.6
P10809_1023
8.0
P10809_1042
12.5
P10809_1061
14.1
P10809_1081
10.3
P10809_1108
7.2
Non-classical monocyte nTPM: 9.8
Samples: 5
Max nTPM: 17.4
Min nTPM: 0.0
P10809_1005
17.4
P10809_1053
16.5
P10809_1072
0.0
P10809_1082
8.2
P10809_1109
7.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.5
Monaco sample
nTPM
Classical monocyte nTPM: 73.6
Samples: 4
Max nTPM: 77.7
Min nTPM: 68.8
RHH5313_R3680
76.5
RHH5221_R3593
77.7
RHH5250_R3622
68.8
RHH5279_R3651
71.4
Intermediate monocyte nTPM: 72.9
Samples: 4
Max nTPM: 99.7
Min nTPM: 40.4
RHH5314_R3681
69.9
RHH5222_R3594
99.7
RHH5251_R3623
40.4
RHH5280_R3652
81.7
Non-classical monocyte nTPM: 86.6
Samples: 4
Max nTPM: 104.8
Min nTPM: 75.5
RHH5315_R3682
104.8
RHH5223_R3595
82.3
RHH5252_R3624
83.7
RHH5281_R3653
75.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.3
Schmiedel sample id
TPM
Classical monocyte TPM: 23.9
Samples: 91
Max TPM: 31.1
Min TPM: 17.3
MONOCYTES_1
31.1
MONOCYTES_2
30.8
MONOCYTES_3
29.5
MONOCYTES_4
29.5
MONOCYTES_5
29.3
MONOCYTES_6
29.0
MONOCYTES_7
28.7
MONOCYTES_8
28.6
MONOCYTES_9
28.6
MONOCYTES_10
28.5
MONOCYTES_11
27.8
MONOCYTES_12
26.9
MONOCYTES_13
26.9
MONOCYTES_14
26.7
MONOCYTES_15
26.6
MONOCYTES_16
26.6
MONOCYTES_17
26.3
MONOCYTES_18
26.3
MONOCYTES_19
26.1
MONOCYTES_20
26.1
MONOCYTES_21
25.8
MONOCYTES_22
25.7
MONOCYTES_23
25.6
MONOCYTES_24
25.5
MONOCYTES_25
25.5
MONOCYTES_26
25.5
MONOCYTES_27
25.5
MONOCYTES_28
25.4
MONOCYTES_29
25.2
MONOCYTES_30
25.1
MONOCYTES_31
25.0
MONOCYTES_32
24.9
MONOCYTES_33
24.9
MONOCYTES_34
24.8
MONOCYTES_35
24.7
MONOCYTES_36
24.5
MONOCYTES_37
24.5
MONOCYTES_38
24.5
MONOCYTES_39
24.4
MONOCYTES_40
24.2
MONOCYTES_41
24.0
MONOCYTES_42
23.8
MONOCYTES_43
23.7
MONOCYTES_44
23.7
MONOCYTES_45
23.6
MONOCYTES_46
23.6
MONOCYTES_47
23.5
MONOCYTES_48
23.5
MONOCYTES_49
23.5
MONOCYTES_50
23.4
MONOCYTES_51
23.3
MONOCYTES_52
23.2
MONOCYTES_53
23.2
MONOCYTES_54
23.1
MONOCYTES_55
23.0
MONOCYTES_56
22.8
MONOCYTES_57
22.8
MONOCYTES_58
22.6
MONOCYTES_59
22.6
MONOCYTES_60
22.5
MONOCYTES_61
22.5
MONOCYTES_62
22.4
MONOCYTES_63
22.1
MONOCYTES_64
22.0
MONOCYTES_65
21.9
MONOCYTES_66
21.9
MONOCYTES_67
21.8
MONOCYTES_68
21.8
MONOCYTES_69
21.8
MONOCYTES_70
21.7
MONOCYTES_71
21.6
MONOCYTES_72
21.4
MONOCYTES_73
21.4
MONOCYTES_74
21.4
MONOCYTES_75
21.2
MONOCYTES_76
21.0
MONOCYTES_77
21.0
MONOCYTES_78
20.9
MONOCYTES_79
20.9
MONOCYTES_80
20.6
MONOCYTES_81
20.6
MONOCYTES_82
20.6
MONOCYTES_83
20.6
MONOCYTES_84
20.3
MONOCYTES_85
20.1
MONOCYTES_86
19.9
MONOCYTES_87
19.9
MONOCYTES_88
19.8
MONOCYTES_89
19.5
MONOCYTES_90
19.2
MONOCYTES_91
17.3
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Non-classical monocyte TPM: 40.3
Samples: 90
Max TPM: 50.2
Min TPM: 29.8
M2_1
50.2
M2_2
49.6
M2_3
49.4
M2_4
49.1
M2_5
49.0
M2_6
48.9
M2_7
48.2
M2_8
47.3
M2_9
46.5
M2_10
46.4
M2_11
45.7
M2_12
45.5
M2_13
45.4
M2_14
45.4
M2_15
45.2
M2_16
44.9
M2_17
44.3
M2_18
44.0
M2_19
43.7
M2_20
43.5
M2_21
43.2
M2_22
43.2
M2_23
43.0
M2_24
42.9
M2_25
42.8
M2_26
42.6
M2_27
42.2
M2_28
42.2
M2_29
41.8
M2_30
41.8
M2_31
41.8
M2_32
41.7
M2_33
41.6
M2_34
41.6
M2_35
41.5
M2_36
41.1
M2_37
41.1
M2_38
41.0
M2_39
41.0
M2_40
40.9
M2_41
40.9
M2_42
40.4
M2_43
40.1
M2_44
40.1
M2_45
40.0
M2_46
40.0
M2_47
40.0
M2_48
39.8
M2_49
39.7
M2_50
39.7
M2_51
39.2
M2_52
39.1
M2_53
39.1
M2_54
39.1
M2_55
39.0
M2_56
39.0
M2_57
39.0
M2_58
38.7
M2_59
38.5
M2_60
38.5
M2_61
38.4
M2_62
38.4
M2_63
38.2
M2_64
37.9
M2_65
37.8
M2_66
37.6
M2_67
37.5
M2_68
37.4
M2_69
37.3
M2_70
37.0
M2_71
37.0
M2_72
36.6
M2_73
36.4
M2_74
36.1
M2_75
36.1
M2_76
35.3
M2_77
35.3
M2_78
35.2
M2_79
35.1
M2_80
34.9
M2_81
34.7
M2_82
34.6
M2_83
34.5
M2_84
34.4
M2_85
34.3
M2_86
32.9
M2_87
32.8
M2_88
32.7
M2_89
32.5
M2_90
29.8
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