We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PCP4L1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PCP4L1
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Mouse brain, Intensity
Hypothalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

50.038
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:22.9 nTPM
HPA Brain:34.9 nTPM
GTEx:22.9 nTPM
Pig:15.0 nTPM
Mouse:55.0 nTPM
Allen mouse:8.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA052833
Hypothalamus mean intensity 50.038
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Dorsal tuberomammillary nucleus -
Mammillary nucleus 18.158
Periventricular hypothalamic nucleus 50.038
Supraoptic nucleus 19.824
Tuberal nucleus 23.901
Ventral tuberomammillary nucleus 22.894
Lateral preoptic area 33.033
Medial preoptic area 26.689
Suprachiasmatic nucleus 22.561
Paraventricular hypothalamic nucleus 30.929
Anterior hypothalamic area, central 27.367
Ventral medial hypothalamic nucleus 36.433
Ventral medial hypothalamic nucleus* -
Arcuate nucleus 40.562
Arcuate nucleus* -
Peduncular part of lateral hypothalmus 38.226
Dorsal medial hypothalamic nucleus 34.237
Stria terminalis* -

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.9
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 19.3
2226 Male, age 75, left hemisphere 20.5
1961 Female, age 42, unknown 18.1
Dorsomedial nucleus
nTPM: 11.0
2017 Female, age 42, unknown 13.6
1989 Male, age 62, unknown 11.2
2041 Female, age 72, unknown 8.0
Lateral hypothalamic area
nTPM: 34.9
2271 Male, age 75, both hemispheres 43.3
2228 Male, age 66, unknown 38.1
1791 Male, age 80, right hemisphere 36.9
2412 Male, age 62, unknown 21.4
Mammillary body
nTPM: 6.0
2413 Male, age 66, unknown 7.5
1945 Male, age 80, right hemisphere 7.1
1948 Female, age 72, unknown 5.4
1923 Female, age 72, unknown 5.3
1834 Female, age 42, unknown 4.5
Paraventricular nucleus
nTPM: 14.6
2700 Male, age 62, unknown 14.6
Preoptic area
nTPM: 28.2
1907 Male, age 80, right hemisphere 43.0
1861 Female, age 42, unknown 25.9
2414 Female, age 72, unknown 15.8
Supraoptic nucleus
nTPM: 13.9
2835 Female, age 72, unknown 20.8
1894 Female, age 72, unknown 15.0
2043 Male, age 62, unknown 6.1
Ventromedial nucleus
nTPM: 33.7
1982 Female, age 72, unknown 44.5
1822 Female, age 42, unknown 22.9

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.9
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 22.9
Samples: 257

Max nTPM: 519.7
Min nTPM: 0.9
Std nTPM: 43.4
Median nTPM: 13.4
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 519.7
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 351.2
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 256.7
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 110.5
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 94.1
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 91.7
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 87.0
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 86.8
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 86.4
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 55.6
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 53.7
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 51.9
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 51.4
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 48.9
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 48.4
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 48.0
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 47.0
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 45.9
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 45.3
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 45.0
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 43.7
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 42.9
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 42.4
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 41.5
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 41.4
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 41.1
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 40.6
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 39.5
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 38.3
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 36.9
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 36.3
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 35.8
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 35.1
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 34.7
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 34.5
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 34.4
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 34.2
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 33.5
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 33.5
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 33.0
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 32.7
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 30.2
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 30.0
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 29.9
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 29.5
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 29.5
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 29.4
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 28.8
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 28.5
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 28.5
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 28.2
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 28.2
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 27.8
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 26.8
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 26.7
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 26.4
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 26.1
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 25.9
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 25.6
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 25.6
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 25.6
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 25.6
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 25.4
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 25.1
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 24.2
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 23.7
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 23.5
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 23.2
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 23.1
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 23.1
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 23.0
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 22.6
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 22.6
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 22.3
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 22.2
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 22.1
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 21.9
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 21.8
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 21.8
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 21.8
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 21.7
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 21.6
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 21.4
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 21.4
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 21.3
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 21.3
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 21.0
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 20.8
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 20.6
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 20.4
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 20.4
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 20.3
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 20.1
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 19.8
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 19.7
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 19.3
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 19.2
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 19.1
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 18.8
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 18.6
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 18.4
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 18.2
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 18.1
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 17.9
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 17.5
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 17.3
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 17.2
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 16.9
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 16.8
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 16.6
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 16.4
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 16.4
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 16.2
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 16.0
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 16.0
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 15.8
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 15.8
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 15.1
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 14.8
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 14.8
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 14.2
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 14.2
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 14.0
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 13.9
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 13.8
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 13.7
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 13.5
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 13.5
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 13.4
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 13.1
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 13.1
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 13.1
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 13.0
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 12.8
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 12.7
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 12.7
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 12.7
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 12.6
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 12.5
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 12.5
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 12.4
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 12.2
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 12.2
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 12.2
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 12.1
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 12.0
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 11.8
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 11.8
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 11.8
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 11.7
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 11.7
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 11.6
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 11.5
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 11.5
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 11.5
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 11.4
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 11.4
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 11.3
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 11.3
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 11.1
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 11.0
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 10.9
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 10.9
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 10.8
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 10.7
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 10.7
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 10.6
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 10.3
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 10.1
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 9.9
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 9.9
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 9.8
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 9.8
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 9.8
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 9.5
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 9.4
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 9.3
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 9.3
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 9.3
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 9.3
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 9.0
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 8.8
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 8.7
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 8.5
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 8.4
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 8.4
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 8.2
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 8.2
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 8.0
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 7.9
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 7.9
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 7.9
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 7.8
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 7.7
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 7.7
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 7.6
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 7.6
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 7.4
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 7.3
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 7.3
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 7.3
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 7.2
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 7.2
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 7.1
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 7.0
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 6.9
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 6.8
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 6.7
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 6.7
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 6.7
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 6.6
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 6.6
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 6.6
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 6.5
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 6.4
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 6.1
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 6.0
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 5.9
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 5.9
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 5.9
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 5.5
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 5.4
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 5.4
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 5.4
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 5.3
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 5.1
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 4.7
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 4.6
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 4.5
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 4.3
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 4.1
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 4.0
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 4.0
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 3.8
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 3.8
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 3.7
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 3.7
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 3.6
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 3.6
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 3.5
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 3.4
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 3.4
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 3.2
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 3.2
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 3.1
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 3.1
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 3.0
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 3.0
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 3.0
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 2.9
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 2.9
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 2.9
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 2.7
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 2.4
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 1.5
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 1.0
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 0.9
Show allShow less

HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.0
Pig sample Sample description nTPM
Hypothalamus
nTPM: 15.0
Samples: 4

Max nTPM: 21.1
Min nTPM: 9.6
Sample A Female 21.1
Sample B Female 19.0
Sample C Male 10.4
Sample D Male 9.6

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.0
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 55.0
Samples: 4

Max nTPM: 66.8
Min nTPM: 46.9
Sample A Male 46.9
Sample B Male 54.0
Sample C Female 52.4
Sample D Female 66.8

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.2
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 8.2
75084520 Antisense, RP_060412_04_C10, Mouse strain C57BL/6J (56 days, male) 12.7
69782873 Antisense, RP_050505_03_H09, Mouse strain C57BL/6J (56 days, male) 3.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo